Cargando…

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

IntAct (freely available at http://www.ebi.ac.uk/intact) is an open-source, open data molecular interaction database populated by data either curated from the literature or from direct data depositions. IntAct has developed a sophisticated web-based curation tool, capable of supporting both IMEx- an...

Descripción completa

Detalles Bibliográficos
Autores principales: Orchard, Sandra, Ammari, Mais, Aranda, Bruno, Breuza, Lionel, Briganti, Leonardo, Broackes-Carter, Fiona, Campbell, Nancy H., Chavali, Gayatri, Chen, Carol, del-Toro, Noemi, Duesbury, Margaret, Dumousseau, Marine, Galeota, Eugenia, Hinz, Ursula, Iannuccelli, Marta, Jagannathan, Sruthi, Jimenez, Rafael, Khadake, Jyoti, Lagreid, Astrid, Licata, Luana, Lovering, Ruth C., Meldal, Birgit, Melidoni, Anna N., Milagros, Mila, Peluso, Daniele, Perfetto, Livia, Porras, Pablo, Raghunath, Arathi, Ricard-Blum, Sylvie, Roechert, Bernd, Stutz, Andre, Tognolli, Michael, van Roey, Kim, Cesareni, Gianni, Hermjakob, Henning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965093/
https://www.ncbi.nlm.nih.gov/pubmed/24234451
http://dx.doi.org/10.1093/nar/gkt1115
_version_ 1782479296964591616
author Orchard, Sandra
Ammari, Mais
Aranda, Bruno
Breuza, Lionel
Briganti, Leonardo
Broackes-Carter, Fiona
Campbell, Nancy H.
Chavali, Gayatri
Chen, Carol
del-Toro, Noemi
Duesbury, Margaret
Dumousseau, Marine
Galeota, Eugenia
Hinz, Ursula
Iannuccelli, Marta
Jagannathan, Sruthi
Jimenez, Rafael
Khadake, Jyoti
Lagreid, Astrid
Licata, Luana
Lovering, Ruth C.
Meldal, Birgit
Melidoni, Anna N.
Milagros, Mila
Peluso, Daniele
Perfetto, Livia
Porras, Pablo
Raghunath, Arathi
Ricard-Blum, Sylvie
Roechert, Bernd
Stutz, Andre
Tognolli, Michael
van Roey, Kim
Cesareni, Gianni
Hermjakob, Henning
author_facet Orchard, Sandra
Ammari, Mais
Aranda, Bruno
Breuza, Lionel
Briganti, Leonardo
Broackes-Carter, Fiona
Campbell, Nancy H.
Chavali, Gayatri
Chen, Carol
del-Toro, Noemi
Duesbury, Margaret
Dumousseau, Marine
Galeota, Eugenia
Hinz, Ursula
Iannuccelli, Marta
Jagannathan, Sruthi
Jimenez, Rafael
Khadake, Jyoti
Lagreid, Astrid
Licata, Luana
Lovering, Ruth C.
Meldal, Birgit
Melidoni, Anna N.
Milagros, Mila
Peluso, Daniele
Perfetto, Livia
Porras, Pablo
Raghunath, Arathi
Ricard-Blum, Sylvie
Roechert, Bernd
Stutz, Andre
Tognolli, Michael
van Roey, Kim
Cesareni, Gianni
Hermjakob, Henning
author_sort Orchard, Sandra
collection PubMed
description IntAct (freely available at http://www.ebi.ac.uk/intact) is an open-source, open data molecular interaction database populated by data either curated from the literature or from direct data depositions. IntAct has developed a sophisticated web-based curation tool, capable of supporting both IMEx- and MIMIx-level curation. This tool is now utilized by multiple additional curation teams, all of whom annotate data directly into the IntAct database. Members of the IntAct team supply appropriate levels of training, perform quality control on entries and take responsibility for long-term data maintenance. Recently, the MINT and IntAct databases decided to merge their separate efforts to make optimal use of limited developer resources and maximize the curation output. All data manually curated by the MINT curators have been moved into the IntAct database at EMBL-EBI and are merged with the existing IntAct dataset. Both IntAct and MINT are active contributors to the IMEx consortium (http://www.imexconsortium.org).
format Online
Article
Text
id pubmed-3965093
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-39650932014-03-25 The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases Orchard, Sandra Ammari, Mais Aranda, Bruno Breuza, Lionel Briganti, Leonardo Broackes-Carter, Fiona Campbell, Nancy H. Chavali, Gayatri Chen, Carol del-Toro, Noemi Duesbury, Margaret Dumousseau, Marine Galeota, Eugenia Hinz, Ursula Iannuccelli, Marta Jagannathan, Sruthi Jimenez, Rafael Khadake, Jyoti Lagreid, Astrid Licata, Luana Lovering, Ruth C. Meldal, Birgit Melidoni, Anna N. Milagros, Mila Peluso, Daniele Perfetto, Livia Porras, Pablo Raghunath, Arathi Ricard-Blum, Sylvie Roechert, Bernd Stutz, Andre Tognolli, Michael van Roey, Kim Cesareni, Gianni Hermjakob, Henning Nucleic Acids Res II. Protein sequence and structure, motifs and domains IntAct (freely available at http://www.ebi.ac.uk/intact) is an open-source, open data molecular interaction database populated by data either curated from the literature or from direct data depositions. IntAct has developed a sophisticated web-based curation tool, capable of supporting both IMEx- and MIMIx-level curation. This tool is now utilized by multiple additional curation teams, all of whom annotate data directly into the IntAct database. Members of the IntAct team supply appropriate levels of training, perform quality control on entries and take responsibility for long-term data maintenance. Recently, the MINT and IntAct databases decided to merge their separate efforts to make optimal use of limited developer resources and maximize the curation output. All data manually curated by the MINT curators have been moved into the IntAct database at EMBL-EBI and are merged with the existing IntAct dataset. Both IntAct and MINT are active contributors to the IMEx consortium (http://www.imexconsortium.org). Oxford University Press 2014-01-01 2013-11-13 /pmc/articles/PMC3965093/ /pubmed/24234451 http://dx.doi.org/10.1093/nar/gkt1115 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle II. Protein sequence and structure, motifs and domains
Orchard, Sandra
Ammari, Mais
Aranda, Bruno
Breuza, Lionel
Briganti, Leonardo
Broackes-Carter, Fiona
Campbell, Nancy H.
Chavali, Gayatri
Chen, Carol
del-Toro, Noemi
Duesbury, Margaret
Dumousseau, Marine
Galeota, Eugenia
Hinz, Ursula
Iannuccelli, Marta
Jagannathan, Sruthi
Jimenez, Rafael
Khadake, Jyoti
Lagreid, Astrid
Licata, Luana
Lovering, Ruth C.
Meldal, Birgit
Melidoni, Anna N.
Milagros, Mila
Peluso, Daniele
Perfetto, Livia
Porras, Pablo
Raghunath, Arathi
Ricard-Blum, Sylvie
Roechert, Bernd
Stutz, Andre
Tognolli, Michael
van Roey, Kim
Cesareni, Gianni
Hermjakob, Henning
The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
title The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
title_full The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
title_fullStr The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
title_full_unstemmed The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
title_short The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
title_sort mintact project—intact as a common curation platform for 11 molecular interaction databases
topic II. Protein sequence and structure, motifs and domains
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965093/
https://www.ncbi.nlm.nih.gov/pubmed/24234451
http://dx.doi.org/10.1093/nar/gkt1115
work_keys_str_mv AT orchardsandra themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT ammarimais themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT arandabruno themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT breuzalionel themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT brigantileonardo themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT broackescarterfiona themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT campbellnancyh themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT chavaligayatri themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT chencarol themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT deltoronoemi themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT duesburymargaret themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT dumousseaumarine themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT galeotaeugenia themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT hinzursula themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT iannuccellimarta themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT jagannathansruthi themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT jimenezrafael themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT khadakejyoti themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT lagreidastrid themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT licataluana themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT loveringruthc themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT meldalbirgit themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT melidoniannan themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT milagrosmila themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT pelusodaniele themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT perfettolivia themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT porraspablo themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT raghunatharathi themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT ricardblumsylvie themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT roechertbernd themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT stutzandre themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT tognollimichael themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT vanroeykim themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT cesarenigianni themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT hermjakobhenning themintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT orchardsandra mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT ammarimais mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT arandabruno mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT breuzalionel mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT brigantileonardo mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT broackescarterfiona mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT campbellnancyh mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT chavaligayatri mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT chencarol mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT deltoronoemi mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT duesburymargaret mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT dumousseaumarine mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT galeotaeugenia mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT hinzursula mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT iannuccellimarta mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT jagannathansruthi mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT jimenezrafael mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT khadakejyoti mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT lagreidastrid mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT licataluana mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT loveringruthc mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT meldalbirgit mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT melidoniannan mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT milagrosmila mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT pelusodaniele mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT perfettolivia mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT porraspablo mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT raghunatharathi mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT ricardblumsylvie mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT roechertbernd mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT stutzandre mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT tognollimichael mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT vanroeykim mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT cesarenigianni mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases
AT hermjakobhenning mintactprojectintactasacommoncurationplatformfor11molecularinteractiondatabases