Ondex Web: web-based visualization and exploration of heterogeneous biological networks

Summary: Ondex Web is a new web-based implementation of the network visualization and exploration tools from the Ondex data integration platform. New features such as context-sensitive menus and annotation tools provide users with intuitive ways to explore and manipulate the appearance of heterogene...

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Autores principales: Taubert, Jan, Hassani-Pak, Keywan, Castells-Brooke, Nathalie, Rawlings, Christopher J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967113/
https://www.ncbi.nlm.nih.gov/pubmed/24363379
http://dx.doi.org/10.1093/bioinformatics/btt740
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author Taubert, Jan
Hassani-Pak, Keywan
Castells-Brooke, Nathalie
Rawlings, Christopher J.
author_facet Taubert, Jan
Hassani-Pak, Keywan
Castells-Brooke, Nathalie
Rawlings, Christopher J.
author_sort Taubert, Jan
collection PubMed
description Summary: Ondex Web is a new web-based implementation of the network visualization and exploration tools from the Ondex data integration platform. New features such as context-sensitive menus and annotation tools provide users with intuitive ways to explore and manipulate the appearance of heterogeneous biological networks. Ondex Web is open source, written in Java and can be easily embedded into Web sites as an applet. Ondex Web supports loading data from a variety of network formats, such as XGMML, NWB, Pajek and OXL. Availability and implementation: http://ondex.rothamsted.ac.uk/OndexWeb. Contact: keywan.hassani-pak@rothamsted.ac.uk
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spelling pubmed-39671132014-04-18 Ondex Web: web-based visualization and exploration of heterogeneous biological networks Taubert, Jan Hassani-Pak, Keywan Castells-Brooke, Nathalie Rawlings, Christopher J. Bioinformatics Applications Notes Summary: Ondex Web is a new web-based implementation of the network visualization and exploration tools from the Ondex data integration platform. New features such as context-sensitive menus and annotation tools provide users with intuitive ways to explore and manipulate the appearance of heterogeneous biological networks. Ondex Web is open source, written in Java and can be easily embedded into Web sites as an applet. Ondex Web supports loading data from a variety of network formats, such as XGMML, NWB, Pajek and OXL. Availability and implementation: http://ondex.rothamsted.ac.uk/OndexWeb. Contact: keywan.hassani-pak@rothamsted.ac.uk Oxford University Press 2014-04-01 2013-12-20 /pmc/articles/PMC3967113/ /pubmed/24363379 http://dx.doi.org/10.1093/bioinformatics/btt740 Text en © The Author 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Taubert, Jan
Hassani-Pak, Keywan
Castells-Brooke, Nathalie
Rawlings, Christopher J.
Ondex Web: web-based visualization and exploration of heterogeneous biological networks
title Ondex Web: web-based visualization and exploration of heterogeneous biological networks
title_full Ondex Web: web-based visualization and exploration of heterogeneous biological networks
title_fullStr Ondex Web: web-based visualization and exploration of heterogeneous biological networks
title_full_unstemmed Ondex Web: web-based visualization and exploration of heterogeneous biological networks
title_short Ondex Web: web-based visualization and exploration of heterogeneous biological networks
title_sort ondex web: web-based visualization and exploration of heterogeneous biological networks
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967113/
https://www.ncbi.nlm.nih.gov/pubmed/24363379
http://dx.doi.org/10.1093/bioinformatics/btt740
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