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Statistical physics approach to quantifying differences in myelinated nerve fibers
We present a new method to quantify differences in myelinated nerve fibers. These differences range from morphologic characteristics of individual fibers to differences in macroscopic properties of collections of fibers. Our method uses statistical physics tools to improve on traditional measures, s...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3968487/ https://www.ncbi.nlm.nih.gov/pubmed/24676146 http://dx.doi.org/10.1038/srep04511 |
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author | Comin, César H. Santos, João R. Corradini, Dario Morrison, Will Curme, Chester Rosene, Douglas L. Gabrielli, Andrea da F. Costa, Luciano Stanley, H. Eugene |
author_facet | Comin, César H. Santos, João R. Corradini, Dario Morrison, Will Curme, Chester Rosene, Douglas L. Gabrielli, Andrea da F. Costa, Luciano Stanley, H. Eugene |
author_sort | Comin, César H. |
collection | PubMed |
description | We present a new method to quantify differences in myelinated nerve fibers. These differences range from morphologic characteristics of individual fibers to differences in macroscopic properties of collections of fibers. Our method uses statistical physics tools to improve on traditional measures, such as fiber size and packing density. As a case study, we analyze cross–sectional electron micrographs from the fornix of young and old rhesus monkeys using a semi-automatic detection algorithm to identify and characterize myelinated axons. We then apply a feature selection approach to identify the features that best distinguish between the young and old age groups, achieving a maximum accuracy of 94% when assigning samples to their age groups. This analysis shows that the best discrimination is obtained using the combination of two features: the fraction of occupied axon area and the effective local density. The latter is a modified calculation of axon density, which reflects how closely axons are packed. Our feature analysis approach can be applied to characterize differences that result from biological processes such as aging, damage from trauma or disease or developmental differences, as well as differences between anatomical regions such as the fornix and the cingulum bundle or corpus callosum. |
format | Online Article Text |
id | pubmed-3968487 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-39684872014-03-28 Statistical physics approach to quantifying differences in myelinated nerve fibers Comin, César H. Santos, João R. Corradini, Dario Morrison, Will Curme, Chester Rosene, Douglas L. Gabrielli, Andrea da F. Costa, Luciano Stanley, H. Eugene Sci Rep Article We present a new method to quantify differences in myelinated nerve fibers. These differences range from morphologic characteristics of individual fibers to differences in macroscopic properties of collections of fibers. Our method uses statistical physics tools to improve on traditional measures, such as fiber size and packing density. As a case study, we analyze cross–sectional electron micrographs from the fornix of young and old rhesus monkeys using a semi-automatic detection algorithm to identify and characterize myelinated axons. We then apply a feature selection approach to identify the features that best distinguish between the young and old age groups, achieving a maximum accuracy of 94% when assigning samples to their age groups. This analysis shows that the best discrimination is obtained using the combination of two features: the fraction of occupied axon area and the effective local density. The latter is a modified calculation of axon density, which reflects how closely axons are packed. Our feature analysis approach can be applied to characterize differences that result from biological processes such as aging, damage from trauma or disease or developmental differences, as well as differences between anatomical regions such as the fornix and the cingulum bundle or corpus callosum. Nature Publishing Group 2014-03-28 /pmc/articles/PMC3968487/ /pubmed/24676146 http://dx.doi.org/10.1038/srep04511 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported license. The images in this article are included in the article's Creative Commons license, unless indicated otherwise in the image credit; if the image is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the image. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ |
spellingShingle | Article Comin, César H. Santos, João R. Corradini, Dario Morrison, Will Curme, Chester Rosene, Douglas L. Gabrielli, Andrea da F. Costa, Luciano Stanley, H. Eugene Statistical physics approach to quantifying differences in myelinated nerve fibers |
title | Statistical physics approach to quantifying differences in myelinated nerve fibers |
title_full | Statistical physics approach to quantifying differences in myelinated nerve fibers |
title_fullStr | Statistical physics approach to quantifying differences in myelinated nerve fibers |
title_full_unstemmed | Statistical physics approach to quantifying differences in myelinated nerve fibers |
title_short | Statistical physics approach to quantifying differences in myelinated nerve fibers |
title_sort | statistical physics approach to quantifying differences in myelinated nerve fibers |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3968487/ https://www.ncbi.nlm.nih.gov/pubmed/24676146 http://dx.doi.org/10.1038/srep04511 |
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