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Use of a linearization approximation facilitating stochastic model building
The objective of this work was to facilitate the development of nonlinear mixed effects models by establishing a diagnostic method for evaluation of stochastic model components. The random effects investigated were between subject, between occasion and residual variability. The method was based on a...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3969514/ https://www.ncbi.nlm.nih.gov/pubmed/24623084 http://dx.doi.org/10.1007/s10928-014-9353-5 |
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author | Svensson, Elin M. Karlsson, Mats O. |
author_facet | Svensson, Elin M. Karlsson, Mats O. |
author_sort | Svensson, Elin M. |
collection | PubMed |
description | The objective of this work was to facilitate the development of nonlinear mixed effects models by establishing a diagnostic method for evaluation of stochastic model components. The random effects investigated were between subject, between occasion and residual variability. The method was based on a first-order conditional estimates linear approximation and evaluated on three real datasets with previously developed population pharmacokinetic models. The results were assessed based on the agreement in difference in objective function value between a basic model and extended models for the standard nonlinear and linearized approach respectively. The linearization was found to accurately identify significant extensions of the model’s stochastic components with notably decreased runtimes as compared to the standard nonlinear analysis. The observed gain in runtimes varied between four to more than 50-fold and the largest gains were seen for models with originally long runtimes. This method may be especially useful as a screening tool to detect correlations between random effects since it substantially quickens the estimation of large variance–covariance blocks. To expedite the application of this diagnostic tool, the linearization procedure has been automated and implemented in the software package PsN. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10928-014-9353-5) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-3969514 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-39695142014-04-07 Use of a linearization approximation facilitating stochastic model building Svensson, Elin M. Karlsson, Mats O. J Pharmacokinet Pharmacodyn Original Paper The objective of this work was to facilitate the development of nonlinear mixed effects models by establishing a diagnostic method for evaluation of stochastic model components. The random effects investigated were between subject, between occasion and residual variability. The method was based on a first-order conditional estimates linear approximation and evaluated on three real datasets with previously developed population pharmacokinetic models. The results were assessed based on the agreement in difference in objective function value between a basic model and extended models for the standard nonlinear and linearized approach respectively. The linearization was found to accurately identify significant extensions of the model’s stochastic components with notably decreased runtimes as compared to the standard nonlinear analysis. The observed gain in runtimes varied between four to more than 50-fold and the largest gains were seen for models with originally long runtimes. This method may be especially useful as a screening tool to detect correlations between random effects since it substantially quickens the estimation of large variance–covariance blocks. To expedite the application of this diagnostic tool, the linearization procedure has been automated and implemented in the software package PsN. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10928-014-9353-5) contains supplementary material, which is available to authorized users. Springer US 2014-03-13 2014 /pmc/articles/PMC3969514/ /pubmed/24623084 http://dx.doi.org/10.1007/s10928-014-9353-5 Text en © The Author(s) 2014 https://creativecommons.org/licenses/by/4.0/ Open AccessThis article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited. |
spellingShingle | Original Paper Svensson, Elin M. Karlsson, Mats O. Use of a linearization approximation facilitating stochastic model building |
title | Use of a linearization approximation facilitating stochastic model building |
title_full | Use of a linearization approximation facilitating stochastic model building |
title_fullStr | Use of a linearization approximation facilitating stochastic model building |
title_full_unstemmed | Use of a linearization approximation facilitating stochastic model building |
title_short | Use of a linearization approximation facilitating stochastic model building |
title_sort | use of a linearization approximation facilitating stochastic model building |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3969514/ https://www.ncbi.nlm.nih.gov/pubmed/24623084 http://dx.doi.org/10.1007/s10928-014-9353-5 |
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