Cargando…

Use of a linearization approximation facilitating stochastic model building

The objective of this work was to facilitate the development of nonlinear mixed effects models by establishing a diagnostic method for evaluation of stochastic model components. The random effects investigated were between subject, between occasion and residual variability. The method was based on a...

Descripción completa

Detalles Bibliográficos
Autores principales: Svensson, Elin M., Karlsson, Mats O.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3969514/
https://www.ncbi.nlm.nih.gov/pubmed/24623084
http://dx.doi.org/10.1007/s10928-014-9353-5
_version_ 1782309272598609920
author Svensson, Elin M.
Karlsson, Mats O.
author_facet Svensson, Elin M.
Karlsson, Mats O.
author_sort Svensson, Elin M.
collection PubMed
description The objective of this work was to facilitate the development of nonlinear mixed effects models by establishing a diagnostic method for evaluation of stochastic model components. The random effects investigated were between subject, between occasion and residual variability. The method was based on a first-order conditional estimates linear approximation and evaluated on three real datasets with previously developed population pharmacokinetic models. The results were assessed based on the agreement in difference in objective function value between a basic model and extended models for the standard nonlinear and linearized approach respectively. The linearization was found to accurately identify significant extensions of the model’s stochastic components with notably decreased runtimes as compared to the standard nonlinear analysis. The observed gain in runtimes varied between four to more than 50-fold and the largest gains were seen for models with originally long runtimes. This method may be especially useful as a screening tool to detect correlations between random effects since it substantially quickens the estimation of large variance–covariance blocks. To expedite the application of this diagnostic tool, the linearization procedure has been automated and implemented in the software package PsN. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10928-014-9353-5) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-3969514
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Springer US
record_format MEDLINE/PubMed
spelling pubmed-39695142014-04-07 Use of a linearization approximation facilitating stochastic model building Svensson, Elin M. Karlsson, Mats O. J Pharmacokinet Pharmacodyn Original Paper The objective of this work was to facilitate the development of nonlinear mixed effects models by establishing a diagnostic method for evaluation of stochastic model components. The random effects investigated were between subject, between occasion and residual variability. The method was based on a first-order conditional estimates linear approximation and evaluated on three real datasets with previously developed population pharmacokinetic models. The results were assessed based on the agreement in difference in objective function value between a basic model and extended models for the standard nonlinear and linearized approach respectively. The linearization was found to accurately identify significant extensions of the model’s stochastic components with notably decreased runtimes as compared to the standard nonlinear analysis. The observed gain in runtimes varied between four to more than 50-fold and the largest gains were seen for models with originally long runtimes. This method may be especially useful as a screening tool to detect correlations between random effects since it substantially quickens the estimation of large variance–covariance blocks. To expedite the application of this diagnostic tool, the linearization procedure has been automated and implemented in the software package PsN. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10928-014-9353-5) contains supplementary material, which is available to authorized users. Springer US 2014-03-13 2014 /pmc/articles/PMC3969514/ /pubmed/24623084 http://dx.doi.org/10.1007/s10928-014-9353-5 Text en © The Author(s) 2014 https://creativecommons.org/licenses/by/4.0/ Open AccessThis article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
spellingShingle Original Paper
Svensson, Elin M.
Karlsson, Mats O.
Use of a linearization approximation facilitating stochastic model building
title Use of a linearization approximation facilitating stochastic model building
title_full Use of a linearization approximation facilitating stochastic model building
title_fullStr Use of a linearization approximation facilitating stochastic model building
title_full_unstemmed Use of a linearization approximation facilitating stochastic model building
title_short Use of a linearization approximation facilitating stochastic model building
title_sort use of a linearization approximation facilitating stochastic model building
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3969514/
https://www.ncbi.nlm.nih.gov/pubmed/24623084
http://dx.doi.org/10.1007/s10928-014-9353-5
work_keys_str_mv AT svenssonelinm useofalinearizationapproximationfacilitatingstochasticmodelbuilding
AT karlssonmatso useofalinearizationapproximationfacilitatingstochasticmodelbuilding