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Commonality of Drug-associated Adverse Events Detected by 4 Commonly Used Data Mining Algorithms
Objectives: Data mining algorithms have been developed for the quantitative detection of drug-associated adverse events (signals) from a large database on spontaneously reported adverse events. In the present study, the commonality of signals detected by 4 commonly used data mining algorithms was ex...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Ivyspring International Publisher
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3970098/ https://www.ncbi.nlm.nih.gov/pubmed/24688309 http://dx.doi.org/10.7150/ijms.7967 |
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author | Sakaeda, Toshiyuki Kadoyama, Kaori Minami, Keiko Okuno, Yasushi |
author_facet | Sakaeda, Toshiyuki Kadoyama, Kaori Minami, Keiko Okuno, Yasushi |
author_sort | Sakaeda, Toshiyuki |
collection | PubMed |
description | Objectives: Data mining algorithms have been developed for the quantitative detection of drug-associated adverse events (signals) from a large database on spontaneously reported adverse events. In the present study, the commonality of signals detected by 4 commonly used data mining algorithms was examined. Methods: A total of 2,231,029 reports were retrieved from the public release of the US Food and Drug Administration Adverse Event Reporting System database between 2004 and 2009. The deletion of duplicated submissions and revision of arbitrary drug names resulted in a reduction in the number of reports to 1,644,220. Associations with adverse events were analyzed for 16 unrelated drugs, using the proportional reporting ratio (PRR), reporting odds ratio (ROR), information component (IC), and empirical Bayes geometric mean (EBGM). Results: All EBGM-based signals were included in the PRR-based signals as well as IC- or ROR-based ones, and PRR- and IC-based signals were included in ROR-based ones. The PRR scores of PRR-based signals were significantly larger for 15 of 16 drugs when adverse events were also detected as signals by the EBGM method, as were the IC scores of IC-based signals for all drugs; however, no such effect was observed in the ROR scores of ROR-based signals. Conclusions: The EBGM method was the most conservative among the 4 methods examined, which suggested its better suitability for pharmacoepidemiological studies. Further examinations should be performed on the reproducibility of clinical observations, especially for EBGM-based signals. |
format | Online Article Text |
id | pubmed-3970098 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-39700982014-03-31 Commonality of Drug-associated Adverse Events Detected by 4 Commonly Used Data Mining Algorithms Sakaeda, Toshiyuki Kadoyama, Kaori Minami, Keiko Okuno, Yasushi Int J Med Sci Research Paper Objectives: Data mining algorithms have been developed for the quantitative detection of drug-associated adverse events (signals) from a large database on spontaneously reported adverse events. In the present study, the commonality of signals detected by 4 commonly used data mining algorithms was examined. Methods: A total of 2,231,029 reports were retrieved from the public release of the US Food and Drug Administration Adverse Event Reporting System database between 2004 and 2009. The deletion of duplicated submissions and revision of arbitrary drug names resulted in a reduction in the number of reports to 1,644,220. Associations with adverse events were analyzed for 16 unrelated drugs, using the proportional reporting ratio (PRR), reporting odds ratio (ROR), information component (IC), and empirical Bayes geometric mean (EBGM). Results: All EBGM-based signals were included in the PRR-based signals as well as IC- or ROR-based ones, and PRR- and IC-based signals were included in ROR-based ones. The PRR scores of PRR-based signals were significantly larger for 15 of 16 drugs when adverse events were also detected as signals by the EBGM method, as were the IC scores of IC-based signals for all drugs; however, no such effect was observed in the ROR scores of ROR-based signals. Conclusions: The EBGM method was the most conservative among the 4 methods examined, which suggested its better suitability for pharmacoepidemiological studies. Further examinations should be performed on the reproducibility of clinical observations, especially for EBGM-based signals. Ivyspring International Publisher 2014-03-15 /pmc/articles/PMC3970098/ /pubmed/24688309 http://dx.doi.org/10.7150/ijms.7967 Text en © Ivyspring International Publisher. This is an open-access article distributed under the terms of the Creative Commons License (http://creativecommons.org/licenses/by-nc-nd/3.0/). Reproduction is permitted for personal, noncommercial use, provided that the article is in whole, unmodified, and properly cited. |
spellingShingle | Research Paper Sakaeda, Toshiyuki Kadoyama, Kaori Minami, Keiko Okuno, Yasushi Commonality of Drug-associated Adverse Events Detected by 4 Commonly Used Data Mining Algorithms |
title | Commonality of Drug-associated Adverse Events Detected by 4 Commonly Used Data Mining Algorithms |
title_full | Commonality of Drug-associated Adverse Events Detected by 4 Commonly Used Data Mining Algorithms |
title_fullStr | Commonality of Drug-associated Adverse Events Detected by 4 Commonly Used Data Mining Algorithms |
title_full_unstemmed | Commonality of Drug-associated Adverse Events Detected by 4 Commonly Used Data Mining Algorithms |
title_short | Commonality of Drug-associated Adverse Events Detected by 4 Commonly Used Data Mining Algorithms |
title_sort | commonality of drug-associated adverse events detected by 4 commonly used data mining algorithms |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3970098/ https://www.ncbi.nlm.nih.gov/pubmed/24688309 http://dx.doi.org/10.7150/ijms.7967 |
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