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A DFT Study of the cis-Dihydroxylation of Nitroaromatic Compounds Catalyzed by Nitrobenzene Dioxygenase
[Image: see text] The mechanism of cis-dihydroxylation of nitrobenzene and 2-nitrotoluene catalyzed by nitrobenzene 1,2-dioxygenase (NBDO), a member of the naphthalene family of Rieske non-heme iron dioxygenases, was studied by means of the density functional theory method using four models of the e...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3970850/ https://www.ncbi.nlm.nih.gov/pubmed/24624972 http://dx.doi.org/10.1021/jp4076299 |
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author | Pabis, Anna Geronimo, Inacrist Paneth, Piotr |
author_facet | Pabis, Anna Geronimo, Inacrist Paneth, Piotr |
author_sort | Pabis, Anna |
collection | PubMed |
description | [Image: see text] The mechanism of cis-dihydroxylation of nitrobenzene and 2-nitrotoluene catalyzed by nitrobenzene 1,2-dioxygenase (NBDO), a member of the naphthalene family of Rieske non-heme iron dioxygenases, was studied by means of the density functional theory method using four models of the enzyme active site. Different possible reaction pathways for the substrate dioxygenation initiated either by the Fe(III)–OOH or HO–Fe(V)=O attack on the aromatic ring were considered and the computed activation barriers compared with the Gibbs free energy of activation for the oxygen–oxygen cleavage leading to the formation of the iron(V)–oxo species from its ferric hydroperoxo precursor. The mechanism of the substrate cis-dihydroxylation leading to the formation of a cis-dihydrodiol was then investigated, and the most feasible mechanism was found to be starting with the attack of the high-valent iron–oxo species on the substrate ring yielding a radical intermediate, which further evolves toward the final product. |
format | Online Article Text |
id | pubmed-3970850 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-39708502014-04-01 A DFT Study of the cis-Dihydroxylation of Nitroaromatic Compounds Catalyzed by Nitrobenzene Dioxygenase Pabis, Anna Geronimo, Inacrist Paneth, Piotr J Phys Chem B [Image: see text] The mechanism of cis-dihydroxylation of nitrobenzene and 2-nitrotoluene catalyzed by nitrobenzene 1,2-dioxygenase (NBDO), a member of the naphthalene family of Rieske non-heme iron dioxygenases, was studied by means of the density functional theory method using four models of the enzyme active site. Different possible reaction pathways for the substrate dioxygenation initiated either by the Fe(III)–OOH or HO–Fe(V)=O attack on the aromatic ring were considered and the computed activation barriers compared with the Gibbs free energy of activation for the oxygen–oxygen cleavage leading to the formation of the iron(V)–oxo species from its ferric hydroperoxo precursor. The mechanism of the substrate cis-dihydroxylation leading to the formation of a cis-dihydrodiol was then investigated, and the most feasible mechanism was found to be starting with the attack of the high-valent iron–oxo species on the substrate ring yielding a radical intermediate, which further evolves toward the final product. American Chemical Society 2014-03-05 2014-03-27 /pmc/articles/PMC3970850/ /pubmed/24624972 http://dx.doi.org/10.1021/jp4076299 Text en Copyright © 2014 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) |
spellingShingle | Pabis, Anna Geronimo, Inacrist Paneth, Piotr A DFT Study of the cis-Dihydroxylation of Nitroaromatic Compounds Catalyzed by Nitrobenzene Dioxygenase |
title | A DFT Study
of the cis-Dihydroxylation of Nitroaromatic Compounds
Catalyzed by Nitrobenzene Dioxygenase |
title_full | A DFT Study
of the cis-Dihydroxylation of Nitroaromatic Compounds
Catalyzed by Nitrobenzene Dioxygenase |
title_fullStr | A DFT Study
of the cis-Dihydroxylation of Nitroaromatic Compounds
Catalyzed by Nitrobenzene Dioxygenase |
title_full_unstemmed | A DFT Study
of the cis-Dihydroxylation of Nitroaromatic Compounds
Catalyzed by Nitrobenzene Dioxygenase |
title_short | A DFT Study
of the cis-Dihydroxylation of Nitroaromatic Compounds
Catalyzed by Nitrobenzene Dioxygenase |
title_sort | dft study
of the cis-dihydroxylation of nitroaromatic compounds
catalyzed by nitrobenzene dioxygenase |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3970850/ https://www.ncbi.nlm.nih.gov/pubmed/24624972 http://dx.doi.org/10.1021/jp4076299 |
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