Cargando…

A mathematical model of metabolism and regulation provides a systems-level view of how Escherichia coli responds to oxygen

The efficient redesign of bacteria for biotechnological purposes, such as biofuel production, waste disposal or specific biocatalytic functions, requires a quantitative systems-level understanding of energy supply, carbon, and redox metabolism. The measurement of transcript levels, metabolite concen...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ederer, Michael, Steinsiek, Sonja, Stagge, Stefan, Rolfe, Matthew D., Ter Beek, Alexander, Knies, David, Teixeira de Mattos, M. Joost, Sauter, Thomas, Green, Jeffrey, Poole, Robert K., Bettenbrock, Katja, Sawodny, Oliver
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2014
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3973912/ https://www.ncbi.nlm.nih.gov/pubmed/24723921 http://dx.doi.org/10.3389/fmicb.2014.00124

Ejemplares similares

Basic Regulatory Principles of Escherichia coli's Electron Transport Chain for Varying Oxygen Conditions
por: Henkel, Sebastian G., et al.
Publicado: (2014)

Analysis of Escherichia coli Mutants with a Linear Respiratory Chain
por: Steinsiek, Sonja, et al.
Publicado: (2014)

Kinase Activity of ArcB from Escherichia coli Is Subject to Regulation by Both Ubiquinone and Demethylmenaquinone
por: Sharma, Poonam, et al.
Publicado: (2013)

Analysing the Role of UVB-Induced Translational Inhibition and PP2Ac Deactivation in NF-κB Signalling Using a Minimal Mathematical Model
por: Witt, Johannes, et al.
Publicado: (2012)

Modeling and Simulation of Optimal Resource Management during the Diurnal Cycle in Emiliania huxleyi by Genome-Scale Reconstruction and an Extended Flux Balance Analysis Approach
por: Knies, David, et al.
Publicado: (2015)

Dissipation of Proton Motive Force is not Sufficient to Induce the Phage Shock Protein Response in Escherichia coli
por: Engl, Christoph, et al.
Publicado: (2011)

Modeling time delay in the NFκB signaling pathway following low dose IL-1 stimulation
por: Witt, Johannes, et al.
Publicado: (2011)

Analysis of global control of Escherichia coli carbohydrate uptake
por: Kremling, Andreas, et al.
Publicado: (2007)

A systems biology approach to analyse leaf carbohydrate metabolism in Arabidopsis thaliana
por: Henkel, Sebastian, et al.
Publicado: (2011)

Transcriptional response of Escherichia coli to ammonia and glucose fluctuations
por: Simen, Joana Danica, et al.
Publicado: (2017)

Model-based analysis of an adaptive evolution experiment with Escherichia coli in a pyruvate limited continuous culture with glycerol
por: Feuer, Ronny, et al.
Publicado: (2012)

Temperature‐dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli
por: Harder, Björn‐Johannes, et al.
Publicado: (2017)

ON/OFF and Beyond - A Boolean Model of Apoptosis
por: Schlatter, Rebekka, et al.
Publicado: (2009)

Is energy excess the initial trigger of carbon overflow metabolism? Transcriptional network response of carbon-limited Escherichia coli to transient carbon excess
por: Li, Zhaopeng, et al.
Publicado: (2022)

Improvement of Acetaldehyde Production in Zymomonas mobilis by Engineering of Its Aerobic Metabolism
por: Kalnenieks, Uldis, et al.
Publicado: (2019)

A Rapid Method for the Extraction and Analysis of Carotenoids and Other Hydrophobic Substances Suitable for Systems Biology Studies with Photosynthetic Bacteria
por: Bóna-Lovász, Judit, et al.
Publicado: (2013)

The Impact of ackA, pta, and ackA-pta Mutations on Growth, Gene Expression and Protein Acetylation in Escherichia coli K-12
por: Schütze, Andrea, et al.
Publicado: (2020)

Agent-Based Modeling of Oxygen-Responsive Transcription Factors in Escherichia coli
por: Bai, Hao, et al.
Publicado: (2014)

Properties of Boolean networks and methods for their tests
por: Klotz, Johannes Georg, et al.
Publicado: (2013)

Modeling the TNFα-Induced Apoptosis Pathway in Hepatocytes
por: Schlatter, Rebekka, et al.
Publicado: (2011)

All three quinone species play distinct roles in ensuring optimal growth under aerobic and fermentative conditions in E. coli K12
por: Nitzschke, Annika, et al.
Publicado: (2018)

Signal processing in urodynamics: towards high definition urethral pressure profilometry
por: Klünder, Mario, et al.
Publicado: (2016)

Great circles: the transits of mathematics and poetry
por: Grosholz, Emily Rolfe
Publicado: (2018)

Precise language responses versus easy rating scales—Comparing respondents’ views with clinicians’ belief of the respondent’s views
por: Sikström, Sverker, et al.
Publicado: (2023)

Modeling system states in liver cells: Survival, apoptosis and their modifications in response to viral infection
por: Philippi, Nicole, et al.
Publicado: (2009)

Interleukin-1β Enhances FasL-Induced Caspase-3/-7 Activity without Increasing Apoptosis in Primary Mouse Hepatocytes
por: Lutz, Anna, et al.
Publicado: (2014)

Mathematics, substance and surmise: views on the meaning and ontology of mathematics
por: Davis, Ernest, et al.
Publicado: (2015)

Transition of an Anaerobic Escherichia coli Culture to Aerobiosis: Balancing mRNA and Protein Levels in a Demand-Directed Dynamic Flux Balance Analysis
por: von Wulffen, Joachim, et al.
Publicado: (2016)

Responding to Change: The View of a Company Doctor
por: Fingret, Ann
Publicado: (1984)

Rapid Sampling of Escherichia coli After Changing Oxygen Conditions Reveals Transcriptional Dynamics
por: von Wulffen, Joachim, et al.
Publicado: (2017)

Reprogramming of Escherichia coli K-12 Metabolism during the Initial Phase of Transition from an Anaerobic to a Micro-Aerobic Environment
por: Trotter, Eleanor W., et al.
Publicado: (2011)

Homeostasis of metabolites in Escherichia coli on transition from anaerobic to aerobic conditions and the transient secretion of pyruvate
por: Yasid, Nur Adeela, et al.
Publicado: (2016)

Model-Based Characterization of Inflammatory Gene Expression Patterns of Activated Macrophages
por: Rex, Julia, et al.
Publicado: (2016)

Zymo-Parts: A Golden Gate Modular Cloning Toolbox for Heterologous Gene Expression in Zymomonas mobilis
por: Behrendt, Gerrich, et al.
Publicado: (2022)

Towards a Treatment of Stress Urinary Incontinence: Application of Mesenchymal Stromal Cells for Regeneration of the Sphincter Muscle
por: Aicher, Wilhelm K., et al.
Publicado: (2014)

High school mathematics lessons to explore, understand, and respond to social injustice
por: Berry, Robert Q, III, et al.
Publicado: (2020)

Mechanism of PP2A-mediated IKKβ dephosphorylation: a systems biological approach
por: Witt, Johannes, et al.
Publicado: (2009)

Immobilization of an amino acid racemase for application in crystallization‐based chiral resolutions of asparagine monohydrate
por: Carneiro, Thiane, et al.
Publicado: (2020)

Tips for Responding to Reviewers’ Comments–from an Editor’s or Reviewer’s Points of View
por: Wong, Grace Lai-Hung
Publicado: (2019)

Interval estimation as viewed from the world of mathematical statistics
por: Clifford, P
Publicado: (2000)

Cannot write session to /tmp/vufind_sessions/sess_3fflqas9edh7dlmd2ms8nhlll8