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Virtual Screening of compounds from Tabernaemontana divaricata for potential anti-bacterial activity

Virtual Screening and Molecular Docking analysis for Tabernaemontana divaricata derived 66 Law Molecular Weight Compounds (LMW) was conducted and to identified and predicted novel molecules as a inhibitor of Streptococcus pneumonia. The investigation has revealed several compounds with optimum bindi...

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Autores principales: Gogoi, Rashmi Rekha, Gogoi, Dhrubajyoti, Bezbaruah, Rajib Lochan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974242/
https://www.ncbi.nlm.nih.gov/pubmed/24748755
http://dx.doi.org/10.6026/97320630010152
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author Gogoi, Rashmi Rekha
Gogoi, Dhrubajyoti
Bezbaruah, Rajib Lochan
author_facet Gogoi, Rashmi Rekha
Gogoi, Dhrubajyoti
Bezbaruah, Rajib Lochan
author_sort Gogoi, Rashmi Rekha
collection PubMed
description Virtual Screening and Molecular Docking analysis for Tabernaemontana divaricata derived 66 Law Molecular Weight Compounds (LMW) was conducted and to identified and predicted novel molecules as a inhibitor of Streptococcus pneumonia. The investigation has revealed several compounds with optimum binding towards Penicillin-binding proteins, Sialidases, Aspartate betasemialdehide dehydrogenase cell membrane protein of Streptococcus pneumonia. Docking results were computed in term of binding energy, ligand efficiency and number of hydrogen bonding. Apparicine (-5.14), 5-Hydroxyvoaphylline (-4.78), Voacangine (-4.7), 19-Hydroxycoronaridine (-4.44) and Coronaridine (-4.72) are identified as most suitable to bind with N-acetylglucosamine-1- phosphate uridyltransferase receptor. Ervaticine (-6.33), Ibogamine (-6.15), Methylvoaphylline (-5.74) and Coronaridine hydroxyindolenine (-5.32) has showed novel binding against the penicillin-binding proteins. Ervaticine (-6.42), 5-oxo-11-hydroxy voaphylline (-6.18), Conolobine B (-6.02) has found optimum binding against the active site of NanB sialidase of Streptococcus pneumonia. The compounds 3S-Cyanocoronaridine (-6.71), 19-Epivoacristine (-5.48) and Ervaticine(-5.45) interacting with aspartate beta-semialdehide and found suitable with least docking score.
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spelling pubmed-39742422014-04-18 Virtual Screening of compounds from Tabernaemontana divaricata for potential anti-bacterial activity Gogoi, Rashmi Rekha Gogoi, Dhrubajyoti Bezbaruah, Rajib Lochan Bioinformation Hypothesis Virtual Screening and Molecular Docking analysis for Tabernaemontana divaricata derived 66 Law Molecular Weight Compounds (LMW) was conducted and to identified and predicted novel molecules as a inhibitor of Streptococcus pneumonia. The investigation has revealed several compounds with optimum binding towards Penicillin-binding proteins, Sialidases, Aspartate betasemialdehide dehydrogenase cell membrane protein of Streptococcus pneumonia. Docking results were computed in term of binding energy, ligand efficiency and number of hydrogen bonding. Apparicine (-5.14), 5-Hydroxyvoaphylline (-4.78), Voacangine (-4.7), 19-Hydroxycoronaridine (-4.44) and Coronaridine (-4.72) are identified as most suitable to bind with N-acetylglucosamine-1- phosphate uridyltransferase receptor. Ervaticine (-6.33), Ibogamine (-6.15), Methylvoaphylline (-5.74) and Coronaridine hydroxyindolenine (-5.32) has showed novel binding against the penicillin-binding proteins. Ervaticine (-6.42), 5-oxo-11-hydroxy voaphylline (-6.18), Conolobine B (-6.02) has found optimum binding against the active site of NanB sialidase of Streptococcus pneumonia. The compounds 3S-Cyanocoronaridine (-6.71), 19-Epivoacristine (-5.48) and Ervaticine(-5.45) interacting with aspartate beta-semialdehide and found suitable with least docking score. Biomedical Informatics 2014-03-19 /pmc/articles/PMC3974242/ /pubmed/24748755 http://dx.doi.org/10.6026/97320630010152 Text en © 2014 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Hypothesis
Gogoi, Rashmi Rekha
Gogoi, Dhrubajyoti
Bezbaruah, Rajib Lochan
Virtual Screening of compounds from Tabernaemontana divaricata for potential anti-bacterial activity
title Virtual Screening of compounds from Tabernaemontana divaricata for potential anti-bacterial activity
title_full Virtual Screening of compounds from Tabernaemontana divaricata for potential anti-bacterial activity
title_fullStr Virtual Screening of compounds from Tabernaemontana divaricata for potential anti-bacterial activity
title_full_unstemmed Virtual Screening of compounds from Tabernaemontana divaricata for potential anti-bacterial activity
title_short Virtual Screening of compounds from Tabernaemontana divaricata for potential anti-bacterial activity
title_sort virtual screening of compounds from tabernaemontana divaricata for potential anti-bacterial activity
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974242/
https://www.ncbi.nlm.nih.gov/pubmed/24748755
http://dx.doi.org/10.6026/97320630010152
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