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MIRAGE: The minimum information required for a glycomics experiment

The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques...

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Autores principales: York, William S, Agravat, Sanjay, Aoki-Kinoshita, Kiyoko F, McBride, Ryan, Campbell, Matthew P, Costello, Catherine E, Dell, Anne, Feizi, Ten, Haslam, Stuart M, Karlsson, Niclas, Khoo, Kay-Hooi, Kolarich, Daniel, Liu, Yan, Novotny, Milos, Packer, Nicolle H, Paulson, James C, Rapp, Erdmann, Ranzinger, Rene, Rudd, Pauline M, Smith, David F, Struwe, Weston B, Tiemeyer, Michael, Wells, Lance, Zaia, Joseph, Kettner, Carsten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3976285/
https://www.ncbi.nlm.nih.gov/pubmed/24653214
http://dx.doi.org/10.1093/glycob/cwu018
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author York, William S
Agravat, Sanjay
Aoki-Kinoshita, Kiyoko F
McBride, Ryan
Campbell, Matthew P
Costello, Catherine E
Dell, Anne
Feizi, Ten
Haslam, Stuart M
Karlsson, Niclas
Khoo, Kay-Hooi
Kolarich, Daniel
Liu, Yan
Novotny, Milos
Packer, Nicolle H
Paulson, James C
Rapp, Erdmann
Ranzinger, Rene
Rudd, Pauline M
Smith, David F
Struwe, Weston B
Tiemeyer, Michael
Wells, Lance
Zaia, Joseph
Kettner, Carsten
author_facet York, William S
Agravat, Sanjay
Aoki-Kinoshita, Kiyoko F
McBride, Ryan
Campbell, Matthew P
Costello, Catherine E
Dell, Anne
Feizi, Ten
Haslam, Stuart M
Karlsson, Niclas
Khoo, Kay-Hooi
Kolarich, Daniel
Liu, Yan
Novotny, Milos
Packer, Nicolle H
Paulson, James C
Rapp, Erdmann
Ranzinger, Rene
Rudd, Pauline M
Smith, David F
Struwe, Weston B
Tiemeyer, Michael
Wells, Lance
Zaia, Joseph
Kettner, Carsten
author_sort York, William S
collection PubMed
description The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with the tools and parameters that were used to process and annotate this data. These guidelines must address a broad range of issues, as glycomics data are inherently complex and are generated using diverse methods, including mass spectrometry (MS), chromatography, glycan array-binding assays, nuclear magnetic resonance (NMR) and other rapidly developing technologies. The acceptance of these guidelines by scientists conducting research on biological systems in which glycans have a significant role will facilitate the evaluation and reproduction of glycomics experiments and data that is reported in scientific journals and uploaded to glycomics databases. As a first step, MIRAGE guidelines for glycan analysis by MS have been recently published (Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., et al. 2013. The minimum information required for a glycomics experiment (MIRAGE) project – Improving the standards for reporting mass spectrometry-based glycoanalytic data. Mol. Cell Proteomics. 12:991–995), allowing them to be implemented and evaluated in the context of real-world glycobiology research. In this paper, we set out the historical context, organization structure and overarching objectives of the MIRAGE initiative.
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spelling pubmed-39762852014-04-07 MIRAGE: The minimum information required for a glycomics experiment York, William S Agravat, Sanjay Aoki-Kinoshita, Kiyoko F McBride, Ryan Campbell, Matthew P Costello, Catherine E Dell, Anne Feizi, Ten Haslam, Stuart M Karlsson, Niclas Khoo, Kay-Hooi Kolarich, Daniel Liu, Yan Novotny, Milos Packer, Nicolle H Paulson, James C Rapp, Erdmann Ranzinger, Rene Rudd, Pauline M Smith, David F Struwe, Weston B Tiemeyer, Michael Wells, Lance Zaia, Joseph Kettner, Carsten Glycobiology Glyco-Forum Section The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with the tools and parameters that were used to process and annotate this data. These guidelines must address a broad range of issues, as glycomics data are inherently complex and are generated using diverse methods, including mass spectrometry (MS), chromatography, glycan array-binding assays, nuclear magnetic resonance (NMR) and other rapidly developing technologies. The acceptance of these guidelines by scientists conducting research on biological systems in which glycans have a significant role will facilitate the evaluation and reproduction of glycomics experiments and data that is reported in scientific journals and uploaded to glycomics databases. As a first step, MIRAGE guidelines for glycan analysis by MS have been recently published (Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., et al. 2013. The minimum information required for a glycomics experiment (MIRAGE) project – Improving the standards for reporting mass spectrometry-based glycoanalytic data. Mol. Cell Proteomics. 12:991–995), allowing them to be implemented and evaluated in the context of real-world glycobiology research. In this paper, we set out the historical context, organization structure and overarching objectives of the MIRAGE initiative. Oxford University Press 2014-05 2014-03-20 /pmc/articles/PMC3976285/ /pubmed/24653214 http://dx.doi.org/10.1093/glycob/cwu018 Text en © The Author 2014. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.
spellingShingle Glyco-Forum Section
York, William S
Agravat, Sanjay
Aoki-Kinoshita, Kiyoko F
McBride, Ryan
Campbell, Matthew P
Costello, Catherine E
Dell, Anne
Feizi, Ten
Haslam, Stuart M
Karlsson, Niclas
Khoo, Kay-Hooi
Kolarich, Daniel
Liu, Yan
Novotny, Milos
Packer, Nicolle H
Paulson, James C
Rapp, Erdmann
Ranzinger, Rene
Rudd, Pauline M
Smith, David F
Struwe, Weston B
Tiemeyer, Michael
Wells, Lance
Zaia, Joseph
Kettner, Carsten
MIRAGE: The minimum information required for a glycomics experiment
title MIRAGE: The minimum information required for a glycomics experiment
title_full MIRAGE: The minimum information required for a glycomics experiment
title_fullStr MIRAGE: The minimum information required for a glycomics experiment
title_full_unstemmed MIRAGE: The minimum information required for a glycomics experiment
title_short MIRAGE: The minimum information required for a glycomics experiment
title_sort mirage: the minimum information required for a glycomics experiment
topic Glyco-Forum Section
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3976285/
https://www.ncbi.nlm.nih.gov/pubmed/24653214
http://dx.doi.org/10.1093/glycob/cwu018
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