Cargando…

A new reference implementation of the PSICQUIC web service

The Proteomics Standard Initiative Common QUery InterfaCe (PSICQUIC) specification was created by the Human Proteome Organization Proteomics Standards Initiative (HUPO-PSI) to enable computational access to molecular-interaction data resources by means of a standard Web Service and query language. C...

Descripción completa

Detalles Bibliográficos
Autores principales: del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Jimenez, Rafael C., Galeota, Eugenia, Launay, Guillaume, Goll, Johannes, Breuer, Karin, Ono, Keiichiro, Salwinski, Lukasz, Hermjakob, Henning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3977660/
https://www.ncbi.nlm.nih.gov/pubmed/23671334
http://dx.doi.org/10.1093/nar/gkt392
_version_ 1782310450588811264
author del-Toro, Noemi
Dumousseau, Marine
Orchard, Sandra
Jimenez, Rafael C.
Galeota, Eugenia
Launay, Guillaume
Goll, Johannes
Breuer, Karin
Ono, Keiichiro
Salwinski, Lukasz
Hermjakob, Henning
author_facet del-Toro, Noemi
Dumousseau, Marine
Orchard, Sandra
Jimenez, Rafael C.
Galeota, Eugenia
Launay, Guillaume
Goll, Johannes
Breuer, Karin
Ono, Keiichiro
Salwinski, Lukasz
Hermjakob, Henning
author_sort del-Toro, Noemi
collection PubMed
description The Proteomics Standard Initiative Common QUery InterfaCe (PSICQUIC) specification was created by the Human Proteome Organization Proteomics Standards Initiative (HUPO-PSI) to enable computational access to molecular-interaction data resources by means of a standard Web Service and query language. Currently providing >150 million binary interaction evidences from 28 servers globally, the PSICQUIC interface allows the concurrent search of multiple molecular-interaction information resources using a single query. Here, we present an extension of the PSICQUIC specification (version 1.3), which has been released to be compliant with the enhanced standards in molecular interactions. The new release also includes a new reference implementation of the PSICQUIC server available to the data providers. It offers augmented web service capabilities and improves the user experience. PSICQUIC has been running for almost 5 years, with a user base growing from only 4 data providers to 28 (April 2013) allowing access to 151 310 109 binary interactions. The power of this web service is shown in PSICQUIC View web application, an example of how to simultaneously query, browse and download results from the different PSICQUIC servers. This application is free and open to all users with no login requirement (http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml).
format Online
Article
Text
id pubmed-3977660
institution National Center for Biotechnology Information
language English
publishDate 2013
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-39776602014-04-07 A new reference implementation of the PSICQUIC web service del-Toro, Noemi Dumousseau, Marine Orchard, Sandra Jimenez, Rafael C. Galeota, Eugenia Launay, Guillaume Goll, Johannes Breuer, Karin Ono, Keiichiro Salwinski, Lukasz Hermjakob, Henning Nucleic Acids Res Web Services The Proteomics Standard Initiative Common QUery InterfaCe (PSICQUIC) specification was created by the Human Proteome Organization Proteomics Standards Initiative (HUPO-PSI) to enable computational access to molecular-interaction data resources by means of a standard Web Service and query language. Currently providing >150 million binary interaction evidences from 28 servers globally, the PSICQUIC interface allows the concurrent search of multiple molecular-interaction information resources using a single query. Here, we present an extension of the PSICQUIC specification (version 1.3), which has been released to be compliant with the enhanced standards in molecular interactions. The new release also includes a new reference implementation of the PSICQUIC server available to the data providers. It offers augmented web service capabilities and improves the user experience. PSICQUIC has been running for almost 5 years, with a user base growing from only 4 data providers to 28 (April 2013) allowing access to 151 310 109 binary interactions. The power of this web service is shown in PSICQUIC View web application, an example of how to simultaneously query, browse and download results from the different PSICQUIC servers. This application is free and open to all users with no login requirement (http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml). Oxford University Press 2013-07 2013-05-11 /pmc/articles/PMC3977660/ /pubmed/23671334 http://dx.doi.org/10.1093/nar/gkt392 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Services
del-Toro, Noemi
Dumousseau, Marine
Orchard, Sandra
Jimenez, Rafael C.
Galeota, Eugenia
Launay, Guillaume
Goll, Johannes
Breuer, Karin
Ono, Keiichiro
Salwinski, Lukasz
Hermjakob, Henning
A new reference implementation of the PSICQUIC web service
title A new reference implementation of the PSICQUIC web service
title_full A new reference implementation of the PSICQUIC web service
title_fullStr A new reference implementation of the PSICQUIC web service
title_full_unstemmed A new reference implementation of the PSICQUIC web service
title_short A new reference implementation of the PSICQUIC web service
title_sort new reference implementation of the psicquic web service
topic Web Services
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3977660/
https://www.ncbi.nlm.nih.gov/pubmed/23671334
http://dx.doi.org/10.1093/nar/gkt392
work_keys_str_mv AT deltoronoemi anewreferenceimplementationofthepsicquicwebservice
AT dumousseaumarine anewreferenceimplementationofthepsicquicwebservice
AT orchardsandra anewreferenceimplementationofthepsicquicwebservice
AT jimenezrafaelc anewreferenceimplementationofthepsicquicwebservice
AT galeotaeugenia anewreferenceimplementationofthepsicquicwebservice
AT launayguillaume anewreferenceimplementationofthepsicquicwebservice
AT golljohannes anewreferenceimplementationofthepsicquicwebservice
AT breuerkarin anewreferenceimplementationofthepsicquicwebservice
AT onokeiichiro anewreferenceimplementationofthepsicquicwebservice
AT salwinskilukasz anewreferenceimplementationofthepsicquicwebservice
AT hermjakobhenning anewreferenceimplementationofthepsicquicwebservice
AT deltoronoemi newreferenceimplementationofthepsicquicwebservice
AT dumousseaumarine newreferenceimplementationofthepsicquicwebservice
AT orchardsandra newreferenceimplementationofthepsicquicwebservice
AT jimenezrafaelc newreferenceimplementationofthepsicquicwebservice
AT galeotaeugenia newreferenceimplementationofthepsicquicwebservice
AT launayguillaume newreferenceimplementationofthepsicquicwebservice
AT golljohannes newreferenceimplementationofthepsicquicwebservice
AT breuerkarin newreferenceimplementationofthepsicquicwebservice
AT onokeiichiro newreferenceimplementationofthepsicquicwebservice
AT salwinskilukasz newreferenceimplementationofthepsicquicwebservice
AT hermjakobhenning newreferenceimplementationofthepsicquicwebservice