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A new reference implementation of the PSICQUIC web service
The Proteomics Standard Initiative Common QUery InterfaCe (PSICQUIC) specification was created by the Human Proteome Organization Proteomics Standards Initiative (HUPO-PSI) to enable computational access to molecular-interaction data resources by means of a standard Web Service and query language. C...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3977660/ https://www.ncbi.nlm.nih.gov/pubmed/23671334 http://dx.doi.org/10.1093/nar/gkt392 |
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author | del-Toro, Noemi Dumousseau, Marine Orchard, Sandra Jimenez, Rafael C. Galeota, Eugenia Launay, Guillaume Goll, Johannes Breuer, Karin Ono, Keiichiro Salwinski, Lukasz Hermjakob, Henning |
author_facet | del-Toro, Noemi Dumousseau, Marine Orchard, Sandra Jimenez, Rafael C. Galeota, Eugenia Launay, Guillaume Goll, Johannes Breuer, Karin Ono, Keiichiro Salwinski, Lukasz Hermjakob, Henning |
author_sort | del-Toro, Noemi |
collection | PubMed |
description | The Proteomics Standard Initiative Common QUery InterfaCe (PSICQUIC) specification was created by the Human Proteome Organization Proteomics Standards Initiative (HUPO-PSI) to enable computational access to molecular-interaction data resources by means of a standard Web Service and query language. Currently providing >150 million binary interaction evidences from 28 servers globally, the PSICQUIC interface allows the concurrent search of multiple molecular-interaction information resources using a single query. Here, we present an extension of the PSICQUIC specification (version 1.3), which has been released to be compliant with the enhanced standards in molecular interactions. The new release also includes a new reference implementation of the PSICQUIC server available to the data providers. It offers augmented web service capabilities and improves the user experience. PSICQUIC has been running for almost 5 years, with a user base growing from only 4 data providers to 28 (April 2013) allowing access to 151 310 109 binary interactions. The power of this web service is shown in PSICQUIC View web application, an example of how to simultaneously query, browse and download results from the different PSICQUIC servers. This application is free and open to all users with no login requirement (http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml). |
format | Online Article Text |
id | pubmed-3977660 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-39776602014-04-07 A new reference implementation of the PSICQUIC web service del-Toro, Noemi Dumousseau, Marine Orchard, Sandra Jimenez, Rafael C. Galeota, Eugenia Launay, Guillaume Goll, Johannes Breuer, Karin Ono, Keiichiro Salwinski, Lukasz Hermjakob, Henning Nucleic Acids Res Web Services The Proteomics Standard Initiative Common QUery InterfaCe (PSICQUIC) specification was created by the Human Proteome Organization Proteomics Standards Initiative (HUPO-PSI) to enable computational access to molecular-interaction data resources by means of a standard Web Service and query language. Currently providing >150 million binary interaction evidences from 28 servers globally, the PSICQUIC interface allows the concurrent search of multiple molecular-interaction information resources using a single query. Here, we present an extension of the PSICQUIC specification (version 1.3), which has been released to be compliant with the enhanced standards in molecular interactions. The new release also includes a new reference implementation of the PSICQUIC server available to the data providers. It offers augmented web service capabilities and improves the user experience. PSICQUIC has been running for almost 5 years, with a user base growing from only 4 data providers to 28 (April 2013) allowing access to 151 310 109 binary interactions. The power of this web service is shown in PSICQUIC View web application, an example of how to simultaneously query, browse and download results from the different PSICQUIC servers. This application is free and open to all users with no login requirement (http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml). Oxford University Press 2013-07 2013-05-11 /pmc/articles/PMC3977660/ /pubmed/23671334 http://dx.doi.org/10.1093/nar/gkt392 Text en © The Author(s) 2013. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Web Services del-Toro, Noemi Dumousseau, Marine Orchard, Sandra Jimenez, Rafael C. Galeota, Eugenia Launay, Guillaume Goll, Johannes Breuer, Karin Ono, Keiichiro Salwinski, Lukasz Hermjakob, Henning A new reference implementation of the PSICQUIC web service |
title | A new reference implementation of the PSICQUIC web service |
title_full | A new reference implementation of the PSICQUIC web service |
title_fullStr | A new reference implementation of the PSICQUIC web service |
title_full_unstemmed | A new reference implementation of the PSICQUIC web service |
title_short | A new reference implementation of the PSICQUIC web service |
title_sort | new reference implementation of the psicquic web service |
topic | Web Services |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3977660/ https://www.ncbi.nlm.nih.gov/pubmed/23671334 http://dx.doi.org/10.1093/nar/gkt392 |
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