Cargando…

Metagenomics for pathogen detection in public health

Traditional pathogen detection methods in public health infectious disease surveillance rely upon the identification of agents that are already known to be associated with a particular clinical syndrome. The emerging field of metagenomics has the potential to revolutionize pathogen detection in publ...

Descripción completa

Detalles Bibliográficos
Autores principales:	Miller, Ruth R, Montoya, Vincent, Gardy, Jennifer L, Patrick, David M, Tang, Patrick
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Review
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978900/ https://www.ncbi.nlm.nih.gov/pubmed/24050114 http://dx.doi.org/10.1186/gm485

Ejemplares similares

A metagenomic approach to investigate the microbial causes of myalgic encephalomyelitis/chronic fatigue syndrome: moving beyond XMRV
por: Miller, Ruth R., et al.
Publicado: (2013)

Metagenomic Investigation of Plasma in Individuals with ME/CFS Highlights the Importance of Technical Controls to Elucidate Contamination and Batch Effects
por: Miller, Ruth R., et al.
Publicado: (2016)

Stopping outbreaks with real-time genomic epidemiology
por: Tang, Patrick, et al.
Publicado: (2014)

Metagenomics Approaches for the Detection and Surveillance of Emerging and Recurrent Plant Pathogens
por: Piombo, Edoardo, et al.
Publicado: (2021)

Submaximal exercise testing with near-infrared spectroscopy in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome patients compared to healthy controls: a case–control study
por: Miller, Ruth R, et al.
Publicado: (2015)

Multicenter assessment of shotgun metagenomics for pathogen detection
por: Liu, Donglai, et al.
Publicado: (2021)

Towards a genomics-informed, real-time, global pathogen surveillance system
por: Gardy, Jennifer L., et al.
Publicado: (2017)

Suitability of aircraft wastewater for pathogen detection and public health surveillance
por: Jones, Davey L., et al.
Publicado: (2023)

Clinical Metagenomics Is Increasingly Accurate and Affordable to Detect Enteric Bacterial Pathogens in Stool
por: Peterson, Christy-Lynn, et al.
Publicado: (2022)

Immunosignature Analysis of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)
por: Günther, Oliver P., et al.
Publicado: (2018)

Pathogen Detection Using Metagenomic Next-Generation Sequencing of Plasma Samples from Patients with Sepsis in Uganda
por: Grundy, Brian S., et al.
Publicado: (2023)

Real-time digital pathogen surveillance — the time is now
por: Gardy, Jennifer, et al.
Publicado: (2015)

RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease
por: Bouquet, Jerome, et al.
Publicado: (2017)

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
por: Kalantar, Katrina L, et al.
Publicado: (2020)

Metagenomics for surveillance of respiratory pathogens
por: Carr, Victoria R., et al.
Publicado: (2021)

Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges
por: Carleton, Heather A., et al.
Publicado: (2019)

A Versatile Sample Processing Workflow for Metagenomic Pathogen Detection
por: Wylezich, Claudia, et al.
Publicado: (2018)

Pathogenic Detection by Metagenomic Next-Generation Sequencing in Osteoarticular Infections
por: Huang, Zi-da, et al.
Publicado: (2020)

Recovery of 52 bacterial genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation and shotgun metagenomics
por: Rojas, Connie A., et al.
Publicado: (2023)

Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection
por: Pettengill, James B, et al.
Publicado: (2012)

Potential role of viral metagenomics as a surveillance tool for the early detection of emerging novel pathogens
por: Mohsin, Hareem, et al.
Publicado: (2020)

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid
por: Miller, Steve, et al.
Publicado: (2019)

Self-rated health and reasons for non-vaccination against seasonal influenza in Canadian adults with asthma
por: Guthrie, Jennifer L., et al.
Publicado: (2017)

Evaluation of the metagenomic next-generation sequencing performance in pathogenic detection in patients with spinal infection
por: Zhang, Yi, et al.
Publicado: (2022)

Surveillance of Foodborne Pathogens: Towards Diagnostic Metagenomics of Fecal Samples
por: Andersen, Sandra Christine, et al.
Publicado: (2018)

Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain
por: Yang, Xiang, et al.
Publicado: (2016)

Metagenomic sequencing for detection and identification of the boxwood blight pathogen Calonectria pseudonaviculata
por: Yang, Shu, et al.
Publicado: (2022)

Deep metagenomic sequencing for endophthalmitis pathogen detection using a nanopore platform
por: Low, Liying, et al.
Publicado: (2022)

Clinical metagenomics
por: Chiu, Charles Y., et al.
Publicado: (2019)

Metagenomic Next-Generation Sequencing Successfully Detects Pulmonary Infectious Pathogens in Children With Hematologic Malignancy
por: Wang, Dao, et al.
Publicado: (2022)

Human Pathogens Abundant in the Bacterial Metagenome of Cigarettes
por: Sapkota, Amy R., et al.
Publicado: (2010)

Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach
por: Hendriksen, Rene S., et al.
Publicado: (2019)

Dangerous Pathogens as a Potential Problem for Public Health
por: Janik, Edyta, et al.
Publicado: (2020)

Application of metagenomic shotgun sequencing to detect vector-borne pathogens in clinical blood samples
por: Vijayvargiya, Prakhar, et al.
Publicado: (2019)

Metagenomic Next-Generation Sequencing for Pathogen Detection and Transcriptomic Analysis in Pediatric Central Nervous System Infections
por: Ramchandar, Nanda, et al.
Publicado: (2021)

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
por: Meyer, F, et al.
Publicado: (2008)

Metagenomic Surveillance of Viral Gastroenteritis in a Public Health Setting
por: Schmitz, Dennis, et al.
Publicado: (2023)

Development and Optimization of an Unbiased, Metagenomics-Based Pathogen Detection Workflow for Infectious Disease and Biosurveillance Applications
por: Parker, Kyle, et al.
Publicado: (2023)

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens
por: Couto, Natacha, et al.
Publicado: (2018)

Fishing in the Soup – Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing
por: Grützke, Josephine, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_vrjmo95levtobi75gngcce03r6