Cargando…

Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii

The advent of high-throughput sequencing technology facilitates the exploration of a variety of reference species outside the few established molecular genetic model systems. Bioinformatic and gene expression analyses provide new ways for comparative analyses between species, for instance, in the fi...

Descripción completa

Detalles Bibliográficos
Autores principales: Backfisch, Benjamin, Kozin, Vitaly V., Kirchmaier, Stephan, Tessmar-Raible, Kristin, Raible, Florian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3979674/
https://www.ncbi.nlm.nih.gov/pubmed/24714200
http://dx.doi.org/10.1371/journal.pone.0093076
_version_ 1782310741117763584
author Backfisch, Benjamin
Kozin, Vitaly V.
Kirchmaier, Stephan
Tessmar-Raible, Kristin
Raible, Florian
author_facet Backfisch, Benjamin
Kozin, Vitaly V.
Kirchmaier, Stephan
Tessmar-Raible, Kristin
Raible, Florian
author_sort Backfisch, Benjamin
collection PubMed
description The advent of high-throughput sequencing technology facilitates the exploration of a variety of reference species outside the few established molecular genetic model systems. Bioinformatic and gene expression analyses provide new ways for comparative analyses between species, for instance, in the field of evolution and development. Despite these advances, a critical bottleneck for the exploration of new model species remains the establishment of functional tools, such as the ability to experimentally express genes in specific cells of an organism. We recently established a first transgenic strain of the annelid Platynereis, using a Tc1/mariner-type Mos1 transposon vector. Here, we compare Mos1 with Tol2, a member of the hAT family of transposons. In Platynereis, Tol2-based constructs showed a higher frequency of nuclear genome insertion and sustained gene expression in the G0 generation. However, in contrast to Mos1-mediated transgenes, Tol2-mediated insertions failed to retain fluorescence in the G1 generation, suggesting a germ line-based silencing mechanism. Furthermore, we present three novel expression constructs that were generated by a simple fusion-PCR approach and allow either ubiquitous or cell-specific expression of a reporter gene. Our study indicates the versatility of Tol2 for transient transgenesis, and provides a template for transgenesis work in other emerging reference species.
format Online
Article
Text
id pubmed-3979674
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-39796742014-04-11 Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii Backfisch, Benjamin Kozin, Vitaly V. Kirchmaier, Stephan Tessmar-Raible, Kristin Raible, Florian PLoS One Research Article The advent of high-throughput sequencing technology facilitates the exploration of a variety of reference species outside the few established molecular genetic model systems. Bioinformatic and gene expression analyses provide new ways for comparative analyses between species, for instance, in the field of evolution and development. Despite these advances, a critical bottleneck for the exploration of new model species remains the establishment of functional tools, such as the ability to experimentally express genes in specific cells of an organism. We recently established a first transgenic strain of the annelid Platynereis, using a Tc1/mariner-type Mos1 transposon vector. Here, we compare Mos1 with Tol2, a member of the hAT family of transposons. In Platynereis, Tol2-based constructs showed a higher frequency of nuclear genome insertion and sustained gene expression in the G0 generation. However, in contrast to Mos1-mediated transgenes, Tol2-mediated insertions failed to retain fluorescence in the G1 generation, suggesting a germ line-based silencing mechanism. Furthermore, we present three novel expression constructs that were generated by a simple fusion-PCR approach and allow either ubiquitous or cell-specific expression of a reporter gene. Our study indicates the versatility of Tol2 for transient transgenesis, and provides a template for transgenesis work in other emerging reference species. Public Library of Science 2014-04-08 /pmc/articles/PMC3979674/ /pubmed/24714200 http://dx.doi.org/10.1371/journal.pone.0093076 Text en © 2014 Backfisch et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Backfisch, Benjamin
Kozin, Vitaly V.
Kirchmaier, Stephan
Tessmar-Raible, Kristin
Raible, Florian
Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii
title Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii
title_full Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii
title_fullStr Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii
title_full_unstemmed Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii
title_short Tools for Gene-Regulatory Analyses in the Marine Annelid Platynereis dumerilii
title_sort tools for gene-regulatory analyses in the marine annelid platynereis dumerilii
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3979674/
https://www.ncbi.nlm.nih.gov/pubmed/24714200
http://dx.doi.org/10.1371/journal.pone.0093076
work_keys_str_mv AT backfischbenjamin toolsforgeneregulatoryanalysesinthemarineannelidplatynereisdumerilii
AT kozinvitalyv toolsforgeneregulatoryanalysesinthemarineannelidplatynereisdumerilii
AT kirchmaierstephan toolsforgeneregulatoryanalysesinthemarineannelidplatynereisdumerilii
AT tessmarraiblekristin toolsforgeneregulatoryanalysesinthemarineannelidplatynereisdumerilii
AT raibleflorian toolsforgeneregulatoryanalysesinthemarineannelidplatynereisdumerilii