Cargando…

A Parallel Attractor Finding Algorithm Based on Boolean Satisfiability for Genetic Regulatory Networks

In biological systems, the dynamic analysis method has gained increasing attention in the past decade. The Boolean network is the most common model of a genetic regulatory network. The interactions of activation and inhibition in the genetic regulatory network are modeled as a set of functions of th...

Descripción completa

Detalles Bibliográficos
Autores principales:	Guo, Wensheng, Yang, Guowu, Wu, Wei, He, Lei, Sun, Mingyu
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3981794/ https://www.ncbi.nlm.nih.gov/pubmed/24718686 http://dx.doi.org/10.1371/journal.pone.0094258

Ejemplares similares

An Efficient Algorithm for Computing Attractors of Synchronous And Asynchronous Boolean Networks
por: Zheng, Desheng, et al.
Publicado: (2013)

Algorithms for Finding Small Attractors in Boolean Networks
por: Zhang, Shu-Qin, et al.
Publicado: (2007)

Attractor detection and enumeration algorithms for Boolean networks
por: Mori, Tomoya, et al.
Publicado: (2022)

An Algorithm for Finding the Singleton Attractors and Pre-Images in Strong-Inhibition Boolean Networks
por: He, Zhiwei, et al.
Publicado: (2016)

Algorithms and Complexity Analyses for Control of Singleton Attractors in Boolean Networks
por: Hayashida, Morihiro, et al.
Publicado: (2008)

Exploring attractor bifurcations in Boolean networks
por: Beneš, Nikola, et al.
Publicado: (2022)

Robustness and Information Propagation in Attractors of Random Boolean Networks
por: Lloyd-Price, Jason, et al.
Publicado: (2012)

AEON: Attractor Bifurcation Analysis of Parametrised Boolean Networks
por: Beneš, Nikola, et al.
Publicado: (2020)

Algorithm for finding partitionings of hard variants of boolean satisfiability problem with application to inversion of some cryptographic functions
por: Semenov, Alexander, et al.
Publicado: (2016)

An efficient algorithm for identifying primary phenotype attractors of a large-scale Boolean network
por: Choo, Sang-Mok, et al.
Publicado: (2016)

Artificial dragonfly algorithm in the Hopfield neural network for optimal Exact Boolean k satisfiability representation
por: Ali, Ghassan Ahmed, et al.
Publicado: (2023)

An Attractor-Based Complexity Measurement for Boolean Recurrent Neural Networks
por: Cabessa, Jérémie, et al.
Publicado: (2014)

Stabilization of perturbed Boolean network attractors through compensatory interactions
por: Campbell, Colin, et al.
Publicado: (2014)

Approximating Attractors of Boolean Networks by Iterative CTL Model Checking
por: Klarner, Hannes, et al.
Publicado: (2015)

Exploring Observability of Attractor Cycles in Boolean Networks for Biomarker Detection
por: QIU, YUSHAN, et al.
Publicado: (2019)

High Quality Test Pattern Generation and Boolean Satisfiability
por: Eggersglüß, Stephan, et al.
Publicado: (2012)

Efficient solution of Boolean satisfiability problems with digital memcomputing
por: Bearden, Sean R. B., et al.
Publicado: (2020)

Therapeutic target discovery using Boolean network attractors: improvements of kali
por: Poret, Arnaud, et al.
Publicado: (2018)

Identification of periodic attractors in Boolean networks using a priori information
por: Münzner, Ulrike, et al.
Publicado: (2022)

On control of singleton attractors in multiple Boolean networks: integer programming-based method
por: Qiu, Yushan, et al.
Publicado: (2014)

Attractor-Based Obstructions to Growth in Homogeneous Cyclic Boolean Automata
por: Khan, Bilal, et al.
Publicado: (2015)

Detection of attractors of large Boolean networks via exhaustive enumeration of appropriate subspaces of the state space
por: Berntenis, Nikolaos, et al.
Publicado: (2013)

The combination of the functionalities of feedback circuits is determinant for the attractors’ number and size in pathway-like Boolean networks
por: Azpeitia, Eugenio, et al.
Publicado: (2017)

Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method
por: Dorier, Julien, et al.
Publicado: (2016)

Erratum: The combination of the functionalities of feedback circuits is determinant for the attractors’ number and size in pathway-like Boolean networks
por: Azpeitia, Eugenio, et al.
Publicado: (2017)

Steady-State Analysis of Genetic Regulatory Networks Modelled by Probabilistic Boolean Networks
por: Shmulevich, Ilya, et al.
Publicado: (2003)

SPABBATS: A pathway-discovery method based on Boolean satisfiability that facilitates the characterization of suppressor mutants
por: Flórez, Lope A, et al.
Publicado: (2011)

A Novel Data-Driven Boolean Model for Genetic Regulatory Networks
por: Chen, Leshi, et al.
Publicado: (2018)

Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks
por: Rozum, Jordan C., et al.
Publicado: (2021)

Detecting controlling nodes of boolean regulatory networks
por: Schober, Steffen, et al.
Publicado: (2011)

Quantum annealing algorithms for Boolean tensor networks
por: Pelofske, Elijah, et al.
Publicado: (2022)

On the underlying assumptions of threshold Boolean networks as a model for genetic regulatory network behavior
por: Tran, Van, et al.
Publicado: (2013)

Attractor-Specific and Common Expression Values in Random Boolean Network Models (with a Preliminary Look at Single-Cell Data)
por: Villani, Marco, et al.
Publicado: (2022)

Dynamical modeling of the cholesterol regulatory pathway with Boolean networks
por: Kervizic, Gwenael, et al.
Publicado: (2008)

Phenotype control techniques for Boolean gene regulatory networks
por: Plaugher, Daniel, et al.
Publicado: (2023)

Quantum Algorithm for Variant Maximum Satisfiability †
por: Alasow, Abdirahman, et al.
Publicado: (2022)

Stochastic Boolean networks: An efficient approach to modeling gene regulatory networks
por: Liang, Jinghang, et al.
Publicado: (2012)

Additive Functions in Boolean Models of Gene Regulatory Network Modules
por: Darabos, Christian, et al.
Publicado: (2011)

Scalable Steady State Analysis of Boolean Biological Regulatory Networks
por: Ay, Ferhat, et al.
Publicado: (2009)

Stability Depends on Positive Autoregulation in Boolean Gene Regulatory Networks
por: Pinho, Ricardo, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_9tq0m4fioajd0j96ueprf77ei3