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Follow up: Advancing the activity cliff concept, part II

We present a follow up contribution to further complement a previous commentary on the activity cliff concept and recent advances in activity cliff research. Activity cliffs have originally been defined as pairs of structurally similar compounds that display a large difference in potency against a g...

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Autores principales: Stumpfe, Dagmar, de la Vega de León, Antonio, Dimova, Dilyana, Bajorath, Jürgen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3983935/
https://www.ncbi.nlm.nih.gov/pubmed/24741442
http://dx.doi.org/10.12688/f1000research.3788.1
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author Stumpfe, Dagmar
de la Vega de León, Antonio
Dimova, Dilyana
Bajorath, Jürgen
author_facet Stumpfe, Dagmar
de la Vega de León, Antonio
Dimova, Dilyana
Bajorath, Jürgen
author_sort Stumpfe, Dagmar
collection PubMed
description We present a follow up contribution to further complement a previous commentary on the activity cliff concept and recent advances in activity cliff research. Activity cliffs have originally been defined as pairs of structurally similar compounds that display a large difference in potency against a given target. For medicinal chemistry, activity cliffs are of high interest because structure-activity relationship (SAR) determinants can often be deduced from them. Herein, we present up-to-date results of systematic analyses of the ligand efficiency and lipophilic efficiency relationships between activity cliff-forming compounds, which further increase their attractiveness for the practice of medicinal chemistry. In addition, we summarize the results of a new analysis of coordinated activity cliffs and clusters they form. Taken together, these findings considerably add to our evaluation and current understanding of the activity cliff concept. The results should be viewed in light of the previous commentary article.
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spelling pubmed-39839352014-04-15 Follow up: Advancing the activity cliff concept, part II Stumpfe, Dagmar de la Vega de León, Antonio Dimova, Dilyana Bajorath, Jürgen F1000Res Commentary We present a follow up contribution to further complement a previous commentary on the activity cliff concept and recent advances in activity cliff research. Activity cliffs have originally been defined as pairs of structurally similar compounds that display a large difference in potency against a given target. For medicinal chemistry, activity cliffs are of high interest because structure-activity relationship (SAR) determinants can often be deduced from them. Herein, we present up-to-date results of systematic analyses of the ligand efficiency and lipophilic efficiency relationships between activity cliff-forming compounds, which further increase their attractiveness for the practice of medicinal chemistry. In addition, we summarize the results of a new analysis of coordinated activity cliffs and clusters they form. Taken together, these findings considerably add to our evaluation and current understanding of the activity cliff concept. The results should be viewed in light of the previous commentary article. F1000Research 2014-03-18 /pmc/articles/PMC3983935/ /pubmed/24741442 http://dx.doi.org/10.12688/f1000research.3788.1 Text en Copyright: © 2014 Stumpfe D et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/publicdomain/zero/1.0/ Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication).
spellingShingle Commentary
Stumpfe, Dagmar
de la Vega de León, Antonio
Dimova, Dilyana
Bajorath, Jürgen
Follow up: Advancing the activity cliff concept, part II
title Follow up: Advancing the activity cliff concept, part II
title_full Follow up: Advancing the activity cliff concept, part II
title_fullStr Follow up: Advancing the activity cliff concept, part II
title_full_unstemmed Follow up: Advancing the activity cliff concept, part II
title_short Follow up: Advancing the activity cliff concept, part II
title_sort follow up: advancing the activity cliff concept, part ii
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3983935/
https://www.ncbi.nlm.nih.gov/pubmed/24741442
http://dx.doi.org/10.12688/f1000research.3788.1
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