Cargando…

Establishment of Quantitative Severity Evaluation Model for Spinal Cord Injury by Metabolomic Fingerprinting

Spinal cord injury (SCI) is a devastating event with a limited hope for recovery and represents an enormous public health issue. It is crucial to understand the disturbances in the metabolic network after SCI to identify injury mechanisms and opportunities for treatment intervention. Through plasma...

Descripción completa

Detalles Bibliográficos
Autores principales: Peng, Jin, Zeng, Jun, Cai, Bin, Yang, Hao, Cohen, Mitchell Jay, Chen, Wei, Sun, Ming-Wei, Lu, Charles Damien, Jiang, Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984092/
https://www.ncbi.nlm.nih.gov/pubmed/24727691
http://dx.doi.org/10.1371/journal.pone.0093736
_version_ 1782311396766121984
author Peng, Jin
Zeng, Jun
Cai, Bin
Yang, Hao
Cohen, Mitchell Jay
Chen, Wei
Sun, Ming-Wei
Lu, Charles Damien
Jiang, Hua
author_facet Peng, Jin
Zeng, Jun
Cai, Bin
Yang, Hao
Cohen, Mitchell Jay
Chen, Wei
Sun, Ming-Wei
Lu, Charles Damien
Jiang, Hua
author_sort Peng, Jin
collection PubMed
description Spinal cord injury (SCI) is a devastating event with a limited hope for recovery and represents an enormous public health issue. It is crucial to understand the disturbances in the metabolic network after SCI to identify injury mechanisms and opportunities for treatment intervention. Through plasma 1H-nuclear magnetic resonance (NMR) screening, we identified 15 metabolites that made up an “Eigen-metabolome” capable of distinguishing rats with severe SCI from healthy control rats. Forty enzymes regulated these 15 metabolites in the metabolic network. We also found that 16 metabolites regulated by 130 enzymes in the metabolic network impacted neurobehavioral recovery. Using the Eigen-metabolome, we established a linear discrimination model to cluster rats with severe and mild SCI and control rats into separate groups and identify the interactive relationships between metabolic biomarkers in the global metabolic network. We identified 10 clusters in the global metabolic network and defined them as distinct metabolic disturbance domains of SCI. Metabolic paths such as retinal, glycerophospholipid, arachidonic acid metabolism; NAD–NADPH conversion process, tyrosine metabolism, and cadaverine and putrescine metabolism were included. In summary, we presented a novel interdisciplinary method that integrates metabolomics and global metabolic network analysis to visualize metabolic network disturbances after SCI. Our study demonstrated the systems biological study paradigm that integration of 1H-NMR, metabolomics, and global metabolic network analysis is useful to visualize complex metabolic disturbances after severe SCI. Furthermore, our findings may provide a new quantitative injury severity evaluation model for clinical use.
format Online
Article
Text
id pubmed-3984092
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-39840922014-04-15 Establishment of Quantitative Severity Evaluation Model for Spinal Cord Injury by Metabolomic Fingerprinting Peng, Jin Zeng, Jun Cai, Bin Yang, Hao Cohen, Mitchell Jay Chen, Wei Sun, Ming-Wei Lu, Charles Damien Jiang, Hua PLoS One Research Article Spinal cord injury (SCI) is a devastating event with a limited hope for recovery and represents an enormous public health issue. It is crucial to understand the disturbances in the metabolic network after SCI to identify injury mechanisms and opportunities for treatment intervention. Through plasma 1H-nuclear magnetic resonance (NMR) screening, we identified 15 metabolites that made up an “Eigen-metabolome” capable of distinguishing rats with severe SCI from healthy control rats. Forty enzymes regulated these 15 metabolites in the metabolic network. We also found that 16 metabolites regulated by 130 enzymes in the metabolic network impacted neurobehavioral recovery. Using the Eigen-metabolome, we established a linear discrimination model to cluster rats with severe and mild SCI and control rats into separate groups and identify the interactive relationships between metabolic biomarkers in the global metabolic network. We identified 10 clusters in the global metabolic network and defined them as distinct metabolic disturbance domains of SCI. Metabolic paths such as retinal, glycerophospholipid, arachidonic acid metabolism; NAD–NADPH conversion process, tyrosine metabolism, and cadaverine and putrescine metabolism were included. In summary, we presented a novel interdisciplinary method that integrates metabolomics and global metabolic network analysis to visualize metabolic network disturbances after SCI. Our study demonstrated the systems biological study paradigm that integration of 1H-NMR, metabolomics, and global metabolic network analysis is useful to visualize complex metabolic disturbances after severe SCI. Furthermore, our findings may provide a new quantitative injury severity evaluation model for clinical use. Public Library of Science 2014-04-11 /pmc/articles/PMC3984092/ /pubmed/24727691 http://dx.doi.org/10.1371/journal.pone.0093736 Text en © 2014 Peng et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Peng, Jin
Zeng, Jun
Cai, Bin
Yang, Hao
Cohen, Mitchell Jay
Chen, Wei
Sun, Ming-Wei
Lu, Charles Damien
Jiang, Hua
Establishment of Quantitative Severity Evaluation Model for Spinal Cord Injury by Metabolomic Fingerprinting
title Establishment of Quantitative Severity Evaluation Model for Spinal Cord Injury by Metabolomic Fingerprinting
title_full Establishment of Quantitative Severity Evaluation Model for Spinal Cord Injury by Metabolomic Fingerprinting
title_fullStr Establishment of Quantitative Severity Evaluation Model for Spinal Cord Injury by Metabolomic Fingerprinting
title_full_unstemmed Establishment of Quantitative Severity Evaluation Model for Spinal Cord Injury by Metabolomic Fingerprinting
title_short Establishment of Quantitative Severity Evaluation Model for Spinal Cord Injury by Metabolomic Fingerprinting
title_sort establishment of quantitative severity evaluation model for spinal cord injury by metabolomic fingerprinting
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984092/
https://www.ncbi.nlm.nih.gov/pubmed/24727691
http://dx.doi.org/10.1371/journal.pone.0093736
work_keys_str_mv AT pengjin establishmentofquantitativeseverityevaluationmodelforspinalcordinjurybymetabolomicfingerprinting
AT zengjun establishmentofquantitativeseverityevaluationmodelforspinalcordinjurybymetabolomicfingerprinting
AT caibin establishmentofquantitativeseverityevaluationmodelforspinalcordinjurybymetabolomicfingerprinting
AT yanghao establishmentofquantitativeseverityevaluationmodelforspinalcordinjurybymetabolomicfingerprinting
AT cohenmitchelljay establishmentofquantitativeseverityevaluationmodelforspinalcordinjurybymetabolomicfingerprinting
AT chenwei establishmentofquantitativeseverityevaluationmodelforspinalcordinjurybymetabolomicfingerprinting
AT sunmingwei establishmentofquantitativeseverityevaluationmodelforspinalcordinjurybymetabolomicfingerprinting
AT lucharlesdamien establishmentofquantitativeseverityevaluationmodelforspinalcordinjurybymetabolomicfingerprinting
AT jianghua establishmentofquantitativeseverityevaluationmodelforspinalcordinjurybymetabolomicfingerprinting