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An Improved Physarum polycephalum Algorithm for the Shortest Path Problem
Shortest path is among classical problems of computer science. The problems are solved by hundreds of algorithms, silicon computing architectures and novel substrate, unconventional, computing devices. Acellular slime mould P. polycephalum is originally famous as a computing biological substrate due...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984829/ https://www.ncbi.nlm.nih.gov/pubmed/24982960 http://dx.doi.org/10.1155/2014/487069 |
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author | Zhang, Xiaoge Wang, Qing Adamatzky, Andrew Chan, Felix T. S. Mahadevan, Sankaran Deng, Yong |
author_facet | Zhang, Xiaoge Wang, Qing Adamatzky, Andrew Chan, Felix T. S. Mahadevan, Sankaran Deng, Yong |
author_sort | Zhang, Xiaoge |
collection | PubMed |
description | Shortest path is among classical problems of computer science. The problems are solved by hundreds of algorithms, silicon computing architectures and novel substrate, unconventional, computing devices. Acellular slime mould P. polycephalum is originally famous as a computing biological substrate due to its alleged ability to approximate shortest path from its inoculation site to a source of nutrients. Several algorithms were designed based on properties of the slime mould. Many of the Physarum-inspired algorithms suffer from a low converge speed. To accelerate the search of a solution and reduce a number of iterations we combined an original model of Physarum-inspired path solver with a new a parameter, called energy. We undertook a series of computational experiments on approximating shortest paths in networks with different topologies, and number of nodes varying from 15 to 2000. We found that the improved Physarum algorithm matches well with existing Physarum-inspired approaches yet outperforms them in number of iterations executed and a total running time. We also compare our algorithm with other existing algorithms, including the ant colony optimization algorithm and Dijkstra algorithm. |
format | Online Article Text |
id | pubmed-3984829 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-39848292014-06-30 An Improved Physarum polycephalum Algorithm for the Shortest Path Problem Zhang, Xiaoge Wang, Qing Adamatzky, Andrew Chan, Felix T. S. Mahadevan, Sankaran Deng, Yong ScientificWorldJournal Research Article Shortest path is among classical problems of computer science. The problems are solved by hundreds of algorithms, silicon computing architectures and novel substrate, unconventional, computing devices. Acellular slime mould P. polycephalum is originally famous as a computing biological substrate due to its alleged ability to approximate shortest path from its inoculation site to a source of nutrients. Several algorithms were designed based on properties of the slime mould. Many of the Physarum-inspired algorithms suffer from a low converge speed. To accelerate the search of a solution and reduce a number of iterations we combined an original model of Physarum-inspired path solver with a new a parameter, called energy. We undertook a series of computational experiments on approximating shortest paths in networks with different topologies, and number of nodes varying from 15 to 2000. We found that the improved Physarum algorithm matches well with existing Physarum-inspired approaches yet outperforms them in number of iterations executed and a total running time. We also compare our algorithm with other existing algorithms, including the ant colony optimization algorithm and Dijkstra algorithm. Hindawi Publishing Corporation 2014 2014-03-25 /pmc/articles/PMC3984829/ /pubmed/24982960 http://dx.doi.org/10.1155/2014/487069 Text en Copyright © 2014 Xiaoge Zhang et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zhang, Xiaoge Wang, Qing Adamatzky, Andrew Chan, Felix T. S. Mahadevan, Sankaran Deng, Yong An Improved Physarum polycephalum Algorithm for the Shortest Path Problem |
title | An Improved Physarum polycephalum Algorithm for the Shortest Path Problem |
title_full | An Improved Physarum polycephalum Algorithm for the Shortest Path Problem |
title_fullStr | An Improved Physarum polycephalum Algorithm for the Shortest Path Problem |
title_full_unstemmed | An Improved Physarum polycephalum Algorithm for the Shortest Path Problem |
title_short | An Improved Physarum polycephalum Algorithm for the Shortest Path Problem |
title_sort | improved physarum polycephalum algorithm for the shortest path problem |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984829/ https://www.ncbi.nlm.nih.gov/pubmed/24982960 http://dx.doi.org/10.1155/2014/487069 |
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