Cargando…

An Improved Physarum polycephalum Algorithm for the Shortest Path Problem

Shortest path is among classical problems of computer science. The problems are solved by hundreds of algorithms, silicon computing architectures and novel substrate, unconventional, computing devices. Acellular slime mould P. polycephalum is originally famous as a computing biological substrate due...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Xiaoge, Wang, Qing, Adamatzky, Andrew, Chan, Felix T. S., Mahadevan, Sankaran, Deng, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984829/
https://www.ncbi.nlm.nih.gov/pubmed/24982960
http://dx.doi.org/10.1155/2014/487069
_version_ 1782311499847434240
author Zhang, Xiaoge
Wang, Qing
Adamatzky, Andrew
Chan, Felix T. S.
Mahadevan, Sankaran
Deng, Yong
author_facet Zhang, Xiaoge
Wang, Qing
Adamatzky, Andrew
Chan, Felix T. S.
Mahadevan, Sankaran
Deng, Yong
author_sort Zhang, Xiaoge
collection PubMed
description Shortest path is among classical problems of computer science. The problems are solved by hundreds of algorithms, silicon computing architectures and novel substrate, unconventional, computing devices. Acellular slime mould P. polycephalum is originally famous as a computing biological substrate due to its alleged ability to approximate shortest path from its inoculation site to a source of nutrients. Several algorithms were designed based on properties of the slime mould. Many of the Physarum-inspired algorithms suffer from a low converge speed. To accelerate the search of a solution and reduce a number of iterations we combined an original model of Physarum-inspired path solver with a new a parameter, called energy. We undertook a series of computational experiments on approximating shortest paths in networks with different topologies, and number of nodes varying from 15 to 2000. We found that the improved Physarum algorithm matches well with existing Physarum-inspired approaches yet outperforms them in number of iterations executed and a total running time. We also compare our algorithm with other existing algorithms, including the ant colony optimization algorithm and Dijkstra algorithm.
format Online
Article
Text
id pubmed-3984829
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Hindawi Publishing Corporation
record_format MEDLINE/PubMed
spelling pubmed-39848292014-06-30 An Improved Physarum polycephalum Algorithm for the Shortest Path Problem Zhang, Xiaoge Wang, Qing Adamatzky, Andrew Chan, Felix T. S. Mahadevan, Sankaran Deng, Yong ScientificWorldJournal Research Article Shortest path is among classical problems of computer science. The problems are solved by hundreds of algorithms, silicon computing architectures and novel substrate, unconventional, computing devices. Acellular slime mould P. polycephalum is originally famous as a computing biological substrate due to its alleged ability to approximate shortest path from its inoculation site to a source of nutrients. Several algorithms were designed based on properties of the slime mould. Many of the Physarum-inspired algorithms suffer from a low converge speed. To accelerate the search of a solution and reduce a number of iterations we combined an original model of Physarum-inspired path solver with a new a parameter, called energy. We undertook a series of computational experiments on approximating shortest paths in networks with different topologies, and number of nodes varying from 15 to 2000. We found that the improved Physarum algorithm matches well with existing Physarum-inspired approaches yet outperforms them in number of iterations executed and a total running time. We also compare our algorithm with other existing algorithms, including the ant colony optimization algorithm and Dijkstra algorithm. Hindawi Publishing Corporation 2014 2014-03-25 /pmc/articles/PMC3984829/ /pubmed/24982960 http://dx.doi.org/10.1155/2014/487069 Text en Copyright © 2014 Xiaoge Zhang et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zhang, Xiaoge
Wang, Qing
Adamatzky, Andrew
Chan, Felix T. S.
Mahadevan, Sankaran
Deng, Yong
An Improved Physarum polycephalum Algorithm for the Shortest Path Problem
title An Improved Physarum polycephalum Algorithm for the Shortest Path Problem
title_full An Improved Physarum polycephalum Algorithm for the Shortest Path Problem
title_fullStr An Improved Physarum polycephalum Algorithm for the Shortest Path Problem
title_full_unstemmed An Improved Physarum polycephalum Algorithm for the Shortest Path Problem
title_short An Improved Physarum polycephalum Algorithm for the Shortest Path Problem
title_sort improved physarum polycephalum algorithm for the shortest path problem
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984829/
https://www.ncbi.nlm.nih.gov/pubmed/24982960
http://dx.doi.org/10.1155/2014/487069
work_keys_str_mv AT zhangxiaoge animprovedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT wangqing animprovedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT adamatzkyandrew animprovedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT chanfelixts animprovedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT mahadevansankaran animprovedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT dengyong animprovedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT zhangxiaoge improvedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT wangqing improvedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT adamatzkyandrew improvedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT chanfelixts improvedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT mahadevansankaran improvedphysarumpolycephalumalgorithmfortheshortestpathproblem
AT dengyong improvedphysarumpolycephalumalgorithmfortheshortestpathproblem