Cargando…
Multiscale Free Energy Simulations: An Efficient Method for Connecting Classical MD Simulations to QM or QM/MM Free Energies Using Non-Boltzmann Bennett Reweighting Schemes
[Image: see text] The reliability of free energy simulations (FES) is limited by two factors: (a) the need for correct sampling and (b) the accuracy of the computational method employed. Classical methods (e.g., force fields) are typically used for FES and present a myriad of challenges, with parame...
Autores principales: | König, Gerhard, Hudson, Phillip S., Boresch, Stefan, Woodcock, H. Lee |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2014
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3985817/ https://www.ncbi.nlm.nih.gov/pubmed/24803863 http://dx.doi.org/10.1021/ct401118k |
Ejemplares similares
-
The Good, the Bad, and the Ugly: “HiPen”, a New Dataset for Validating (S)QM/MM Free Energy Simulations
por: Kearns, Fiona L., et al.
Publicado: (2019) -
Mechanism of Chiral-Selective Aminoacylation of an RNA Minihelix Explored by QM/MM Free-Energy Simulations
por: Ando, Tadashi, et al.
Publicado: (2023) -
Obtaining QM/MM binding free energies in the SAMPL8 drugs of abuse challenge: indirect approaches
por: Hudson, Phillip S., et al.
Publicado: (2022) -
Adaptive QM/MM for Molecular Dynamics Simulations: 5. On the Energy-Conserved Permuted Adaptive-Partitioning Schemes
por: Duster, Adam W., et al.
Publicado: (2018) -
Spin‐projected QM/MM Free Energy Simulations for Oxidation Reaction of Guanine in B−DNA by Singlet Oxygen
por: Saito, Toru, et al.
Publicado: (2021)