Cargando…

Advantages and Limitations of Anticipating Laboratory Test Results from Regression- and Tree-Based Rules Derived from Electronic Health-Record Data

Laboratory testing is the single highest-volume medical activity, making it useful to ask how well one can anticipate whether a given test result will be high, low, or within the reference interval (“normal”). We analyzed 10 years of electronic health records—a total of 69.4 million blood tests—to s...

Descripción completa

Detalles Bibliográficos
Autores principales: Mohammad, Fahim, Theisen-Toupal, Jesse C., Arnaout, Ramy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3986061/
https://www.ncbi.nlm.nih.gov/pubmed/24732572
http://dx.doi.org/10.1371/journal.pone.0092199
_version_ 1782311659964989440
author Mohammad, Fahim
Theisen-Toupal, Jesse C.
Arnaout, Ramy
author_facet Mohammad, Fahim
Theisen-Toupal, Jesse C.
Arnaout, Ramy
author_sort Mohammad, Fahim
collection PubMed
description Laboratory testing is the single highest-volume medical activity, making it useful to ask how well one can anticipate whether a given test result will be high, low, or within the reference interval (“normal”). We analyzed 10 years of electronic health records—a total of 69.4 million blood tests—to see how well standard rule-mining techniques can anticipate test results based on patient age and gender, recent diagnoses, and recent laboratory test results. We evaluated rules according to their positive and negative predictive value (PPV and NPV) and area under the receiver-operator characteristic curve (ROC AUCs). Using a stringent cutoff of PPV and/or NPV≥0.95, standard techniques yield few rules for sendout tests but several for in-house tests, mostly for repeat laboratory tests that are part of the complete blood count and basic metabolic panel. Most rules were clinically and pathophysiologically plausible, and several seemed clinically useful for informing pre-test probability of a given result. But overall, rules were unlikely to be able to function as a general substitute for actually ordering a test. Improving laboratory utilization will likely require different input data and/or alternative methods.
format Online
Article
Text
id pubmed-3986061
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-39860612014-04-15 Advantages and Limitations of Anticipating Laboratory Test Results from Regression- and Tree-Based Rules Derived from Electronic Health-Record Data Mohammad, Fahim Theisen-Toupal, Jesse C. Arnaout, Ramy PLoS One Research Article Laboratory testing is the single highest-volume medical activity, making it useful to ask how well one can anticipate whether a given test result will be high, low, or within the reference interval (“normal”). We analyzed 10 years of electronic health records—a total of 69.4 million blood tests—to see how well standard rule-mining techniques can anticipate test results based on patient age and gender, recent diagnoses, and recent laboratory test results. We evaluated rules according to their positive and negative predictive value (PPV and NPV) and area under the receiver-operator characteristic curve (ROC AUCs). Using a stringent cutoff of PPV and/or NPV≥0.95, standard techniques yield few rules for sendout tests but several for in-house tests, mostly for repeat laboratory tests that are part of the complete blood count and basic metabolic panel. Most rules were clinically and pathophysiologically plausible, and several seemed clinically useful for informing pre-test probability of a given result. But overall, rules were unlikely to be able to function as a general substitute for actually ordering a test. Improving laboratory utilization will likely require different input data and/or alternative methods. Public Library of Science 2014-04-14 /pmc/articles/PMC3986061/ /pubmed/24732572 http://dx.doi.org/10.1371/journal.pone.0092199 Text en © 2014 Mohammad et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Mohammad, Fahim
Theisen-Toupal, Jesse C.
Arnaout, Ramy
Advantages and Limitations of Anticipating Laboratory Test Results from Regression- and Tree-Based Rules Derived from Electronic Health-Record Data
title Advantages and Limitations of Anticipating Laboratory Test Results from Regression- and Tree-Based Rules Derived from Electronic Health-Record Data
title_full Advantages and Limitations of Anticipating Laboratory Test Results from Regression- and Tree-Based Rules Derived from Electronic Health-Record Data
title_fullStr Advantages and Limitations of Anticipating Laboratory Test Results from Regression- and Tree-Based Rules Derived from Electronic Health-Record Data
title_full_unstemmed Advantages and Limitations of Anticipating Laboratory Test Results from Regression- and Tree-Based Rules Derived from Electronic Health-Record Data
title_short Advantages and Limitations of Anticipating Laboratory Test Results from Regression- and Tree-Based Rules Derived from Electronic Health-Record Data
title_sort advantages and limitations of anticipating laboratory test results from regression- and tree-based rules derived from electronic health-record data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3986061/
https://www.ncbi.nlm.nih.gov/pubmed/24732572
http://dx.doi.org/10.1371/journal.pone.0092199
work_keys_str_mv AT mohammadfahim advantagesandlimitationsofanticipatinglaboratorytestresultsfromregressionandtreebasedrulesderivedfromelectronichealthrecorddata
AT theisentoupaljessec advantagesandlimitationsofanticipatinglaboratorytestresultsfromregressionandtreebasedrulesderivedfromelectronichealthrecorddata
AT arnaoutramy advantagesandlimitationsofanticipatinglaboratorytestresultsfromregressionandtreebasedrulesderivedfromelectronichealthrecorddata