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Classical dynamin DNM1 and DNM3 genes attain maximum expression in the normal human central nervous system

Dynamin is a super-family of large GTPase proteins that polymerise during their biological activity. Dynamin polymers form around lipid tubes and contribute to the membrane fission and scission of nascent vesicles from parent membranes. Here we used the NCBI Gene Expression Omnibus (GEO) database an...

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Autores principales: Romeu, Antoni, Arola, Lluís
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3986822/
https://www.ncbi.nlm.nih.gov/pubmed/24673776
http://dx.doi.org/10.1186/1756-0500-7-188
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author Romeu, Antoni
Arola, Lluís
author_facet Romeu, Antoni
Arola, Lluís
author_sort Romeu, Antoni
collection PubMed
description Dynamin is a super-family of large GTPase proteins that polymerise during their biological activity. Dynamin polymers form around lipid tubes and contribute to the membrane fission and scission of nascent vesicles from parent membranes. Here we used the NCBI Gene Expression Omnibus (GEO) database and the BioGPS gene expression portal to study differential dynamin gene expression in normal human organs or tissues. From the GDS1096 and GDS596 dataset, we downloaded the relative expression levels of dynamin-related genes (presented as percentages), with respect to all of the other genes on the array (platform Affymetrix GPL96), which includes the best characterised human genes. The expression profiles of dynamin in the central nervous system (CNS) are clearly distinct from the expression profiles in the other organs or tissues studied. We found that the classical dynamin DNM1 and DNM3 genes reach their maximum expression levels (100% of maximal expression) in all normal human CNS tissues studied. This is in contrast to the expression profile in the other normal human organs or tissues studied, in which both dynamin DNM1 and DNM3 genes showed approximately 50% maximal expression. This data mining analysis supports the concept that there is a relationship between the synapse and the molecular function of dynamin, suggesting a new field of work in the study of neurodegenerative diseases.
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spelling pubmed-39868222014-04-16 Classical dynamin DNM1 and DNM3 genes attain maximum expression in the normal human central nervous system Romeu, Antoni Arola, Lluís BMC Res Notes Correspondence Dynamin is a super-family of large GTPase proteins that polymerise during their biological activity. Dynamin polymers form around lipid tubes and contribute to the membrane fission and scission of nascent vesicles from parent membranes. Here we used the NCBI Gene Expression Omnibus (GEO) database and the BioGPS gene expression portal to study differential dynamin gene expression in normal human organs or tissues. From the GDS1096 and GDS596 dataset, we downloaded the relative expression levels of dynamin-related genes (presented as percentages), with respect to all of the other genes on the array (platform Affymetrix GPL96), which includes the best characterised human genes. The expression profiles of dynamin in the central nervous system (CNS) are clearly distinct from the expression profiles in the other organs or tissues studied. We found that the classical dynamin DNM1 and DNM3 genes reach their maximum expression levels (100% of maximal expression) in all normal human CNS tissues studied. This is in contrast to the expression profile in the other normal human organs or tissues studied, in which both dynamin DNM1 and DNM3 genes showed approximately 50% maximal expression. This data mining analysis supports the concept that there is a relationship between the synapse and the molecular function of dynamin, suggesting a new field of work in the study of neurodegenerative diseases. BioMed Central 2014-03-28 /pmc/articles/PMC3986822/ /pubmed/24673776 http://dx.doi.org/10.1186/1756-0500-7-188 Text en Copyright © 2014 Romeu and Arola; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Correspondence
Romeu, Antoni
Arola, Lluís
Classical dynamin DNM1 and DNM3 genes attain maximum expression in the normal human central nervous system
title Classical dynamin DNM1 and DNM3 genes attain maximum expression in the normal human central nervous system
title_full Classical dynamin DNM1 and DNM3 genes attain maximum expression in the normal human central nervous system
title_fullStr Classical dynamin DNM1 and DNM3 genes attain maximum expression in the normal human central nervous system
title_full_unstemmed Classical dynamin DNM1 and DNM3 genes attain maximum expression in the normal human central nervous system
title_short Classical dynamin DNM1 and DNM3 genes attain maximum expression in the normal human central nervous system
title_sort classical dynamin dnm1 and dnm3 genes attain maximum expression in the normal human central nervous system
topic Correspondence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3986822/
https://www.ncbi.nlm.nih.gov/pubmed/24673776
http://dx.doi.org/10.1186/1756-0500-7-188
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