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Ethylene glycol revisited: Molecular dynamics simulations and visualization of the liquid and its hydrogen-bond network()

Molecular dynamics simulations of liquid ethylene glycol described by the OPLS-AA force field were performed to gain insight into its hydrogen-bond structure. We use the population correlation function as a statistical measure for the hydrogen-bond lifetime. In an attempt to understand the complicat...

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Autores principales: Kaiser, Alexander, Ismailova, Oksana, Koskela, Antti, Huber, Stefan E., Ritter, Marcel, Cosenza, Biagio, Benger, Werner, Nazmutdinov, Renat, Probst, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3990454/
https://www.ncbi.nlm.nih.gov/pubmed/24748697
http://dx.doi.org/10.1016/j.molliq.2013.05.033
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author Kaiser, Alexander
Ismailova, Oksana
Koskela, Antti
Huber, Stefan E.
Ritter, Marcel
Cosenza, Biagio
Benger, Werner
Nazmutdinov, Renat
Probst, Michael
author_facet Kaiser, Alexander
Ismailova, Oksana
Koskela, Antti
Huber, Stefan E.
Ritter, Marcel
Cosenza, Biagio
Benger, Werner
Nazmutdinov, Renat
Probst, Michael
author_sort Kaiser, Alexander
collection PubMed
description Molecular dynamics simulations of liquid ethylene glycol described by the OPLS-AA force field were performed to gain insight into its hydrogen-bond structure. We use the population correlation function as a statistical measure for the hydrogen-bond lifetime. In an attempt to understand the complicated hydrogen-bonding, we developed new molecular visualization tools within the Vish Visualization shell and used it to visualize the life of each individual hydrogen-bond. With this tool hydrogen-bond formation and breaking as well as clustering and chain formation in hydrogen-bonded liquids can be observed directly. Liquid ethylene glycol at room temperature does not show significant clustering or chain building. The hydrogen-bonds break often due to the rotational and vibrational motions of the molecules leading to an H-bond half-life time of approximately 1.5 ps. However, most of the H-bonds are reformed again so that after 50 ps only 40% of these H-bonds are irreversibly broken due to diffusional motion. This hydrogen-bond half-life time due to diffusional motion is 80.3 ps. The work was preceded by a careful check of various OPLS-based force fields used in the literature. It was found that they lead to quite different angular and H-bond distributions.
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spelling pubmed-39904542014-04-18 Ethylene glycol revisited: Molecular dynamics simulations and visualization of the liquid and its hydrogen-bond network() Kaiser, Alexander Ismailova, Oksana Koskela, Antti Huber, Stefan E. Ritter, Marcel Cosenza, Biagio Benger, Werner Nazmutdinov, Renat Probst, Michael J Mol Liq Article Molecular dynamics simulations of liquid ethylene glycol described by the OPLS-AA force field were performed to gain insight into its hydrogen-bond structure. We use the population correlation function as a statistical measure for the hydrogen-bond lifetime. In an attempt to understand the complicated hydrogen-bonding, we developed new molecular visualization tools within the Vish Visualization shell and used it to visualize the life of each individual hydrogen-bond. With this tool hydrogen-bond formation and breaking as well as clustering and chain formation in hydrogen-bonded liquids can be observed directly. Liquid ethylene glycol at room temperature does not show significant clustering or chain building. The hydrogen-bonds break often due to the rotational and vibrational motions of the molecules leading to an H-bond half-life time of approximately 1.5 ps. However, most of the H-bonds are reformed again so that after 50 ps only 40% of these H-bonds are irreversibly broken due to diffusional motion. This hydrogen-bond half-life time due to diffusional motion is 80.3 ps. The work was preceded by a careful check of various OPLS-based force fields used in the literature. It was found that they lead to quite different angular and H-bond distributions. Elsevier 2014-01 /pmc/articles/PMC3990454/ /pubmed/24748697 http://dx.doi.org/10.1016/j.molliq.2013.05.033 Text en © 2013 The Authors https://creativecommons.org/licenses/by-nc-sa/3.0/This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License (https://creativecommons.org/licenses/by-nc-sa/3.0/) .
spellingShingle Article
Kaiser, Alexander
Ismailova, Oksana
Koskela, Antti
Huber, Stefan E.
Ritter, Marcel
Cosenza, Biagio
Benger, Werner
Nazmutdinov, Renat
Probst, Michael
Ethylene glycol revisited: Molecular dynamics simulations and visualization of the liquid and its hydrogen-bond network()
title Ethylene glycol revisited: Molecular dynamics simulations and visualization of the liquid and its hydrogen-bond network()
title_full Ethylene glycol revisited: Molecular dynamics simulations and visualization of the liquid and its hydrogen-bond network()
title_fullStr Ethylene glycol revisited: Molecular dynamics simulations and visualization of the liquid and its hydrogen-bond network()
title_full_unstemmed Ethylene glycol revisited: Molecular dynamics simulations and visualization of the liquid and its hydrogen-bond network()
title_short Ethylene glycol revisited: Molecular dynamics simulations and visualization of the liquid and its hydrogen-bond network()
title_sort ethylene glycol revisited: molecular dynamics simulations and visualization of the liquid and its hydrogen-bond network()
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3990454/
https://www.ncbi.nlm.nih.gov/pubmed/24748697
http://dx.doi.org/10.1016/j.molliq.2013.05.033
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