Cargando…

Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen

Permanent stop-and-shop large-scale mouse mutant resources provide an excellent platform to decipher tissue phenogenomics. Here we analyse skin from 538 knockout mouse mutants generated by the Sanger Institute Mouse Genetics Project. We optimize immunolabelling of tail epidermal wholemounts to allow...

Descripción completa

Detalles Bibliográficos
Autores principales: Liakath-Ali, Kifayathullah, Vancollie, Valerie E., Heath, Emma, Smedley, Damian P., Estabel, Jeanne, Sunter, David, DiTommaso, Tia, White, Jacqueline K., Ramirez-Solis, Ramiro, Smyth, Ian, Steel, Karen P., Watt, Fiona M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Pub. Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3996542/
https://www.ncbi.nlm.nih.gov/pubmed/24721909
http://dx.doi.org/10.1038/ncomms4540
_version_ 1782313063202947072
author Liakath-Ali, Kifayathullah
Vancollie, Valerie E.
Heath, Emma
Smedley, Damian P.
Estabel, Jeanne
Sunter, David
DiTommaso, Tia
White, Jacqueline K.
Ramirez-Solis, Ramiro
Smyth, Ian
Steel, Karen P.
Watt, Fiona M.
author_facet Liakath-Ali, Kifayathullah
Vancollie, Valerie E.
Heath, Emma
Smedley, Damian P.
Estabel, Jeanne
Sunter, David
DiTommaso, Tia
White, Jacqueline K.
Ramirez-Solis, Ramiro
Smyth, Ian
Steel, Karen P.
Watt, Fiona M.
author_sort Liakath-Ali, Kifayathullah
collection PubMed
description Permanent stop-and-shop large-scale mouse mutant resources provide an excellent platform to decipher tissue phenogenomics. Here we analyse skin from 538 knockout mouse mutants generated by the Sanger Institute Mouse Genetics Project. We optimize immunolabelling of tail epidermal wholemounts to allow systematic annotation of hair follicle, sebaceous gland and interfollicular epidermal abnormalities using ontology terms from the Mammalian Phenotype Ontology. Of the 50 mutants with an epidermal phenotype, 9 map to human genetic conditions with skin abnormalities. Some mutant genes are expressed in the skin, whereas others are not, indicating systemic effects. One phenotype is affected by diet and several are incompletely penetrant. In-depth analysis of three mutants, Krt76, Myo5a (a model of human Griscelli syndrome) and Mysm1, provides validation of the screen. Our study is the first large-scale genome-wide tissue phenotype screen from the International Knockout Mouse Consortium and provides an open access resource for the scientific community.
format Online
Article
Text
id pubmed-3996542
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Nature Pub. Group
record_format MEDLINE/PubMed
spelling pubmed-39965422014-04-24 Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen Liakath-Ali, Kifayathullah Vancollie, Valerie E. Heath, Emma Smedley, Damian P. Estabel, Jeanne Sunter, David DiTommaso, Tia White, Jacqueline K. Ramirez-Solis, Ramiro Smyth, Ian Steel, Karen P. Watt, Fiona M. Nat Commun Article Permanent stop-and-shop large-scale mouse mutant resources provide an excellent platform to decipher tissue phenogenomics. Here we analyse skin from 538 knockout mouse mutants generated by the Sanger Institute Mouse Genetics Project. We optimize immunolabelling of tail epidermal wholemounts to allow systematic annotation of hair follicle, sebaceous gland and interfollicular epidermal abnormalities using ontology terms from the Mammalian Phenotype Ontology. Of the 50 mutants with an epidermal phenotype, 9 map to human genetic conditions with skin abnormalities. Some mutant genes are expressed in the skin, whereas others are not, indicating systemic effects. One phenotype is affected by diet and several are incompletely penetrant. In-depth analysis of three mutants, Krt76, Myo5a (a model of human Griscelli syndrome) and Mysm1, provides validation of the screen. Our study is the first large-scale genome-wide tissue phenotype screen from the International Knockout Mouse Consortium and provides an open access resource for the scientific community. Nature Pub. Group 2014-04-11 /pmc/articles/PMC3996542/ /pubmed/24721909 http://dx.doi.org/10.1038/ncomms4540 Text en Copyright © 2014, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. http://creativecommons.org/licenses/by-nc-by/3.0/ This work is licensed under a Creative Commons Attribution 3.0 Unported License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/
spellingShingle Article
Liakath-Ali, Kifayathullah
Vancollie, Valerie E.
Heath, Emma
Smedley, Damian P.
Estabel, Jeanne
Sunter, David
DiTommaso, Tia
White, Jacqueline K.
Ramirez-Solis, Ramiro
Smyth, Ian
Steel, Karen P.
Watt, Fiona M.
Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen
title Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen
title_full Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen
title_fullStr Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen
title_full_unstemmed Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen
title_short Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen
title_sort novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3996542/
https://www.ncbi.nlm.nih.gov/pubmed/24721909
http://dx.doi.org/10.1038/ncomms4540
work_keys_str_mv AT liakathalikifayathullah novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT vancollievaleriee novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT heathemma novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT smedleydamianp novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT estabeljeanne novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT sunterdavid novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT ditommasotia novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT whitejacquelinek novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT ramirezsolisramiro novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT smythian novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT steelkarenp novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen
AT wattfionam novelskinphenotypesrevealedbyagenomewidemousereversegeneticscreen