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The Comparison of Tree-Sibling Time Consistent Phylogenetic Networks Is Graph Isomorphism-Complete
Several polynomial time computable metrics on the class of semibinary tree-sibling time consistent phylogenetic networks are available in the literature; in particular, the problem of deciding if two networks of this kind are isomorphic is in P. In this paper, we show that if we remove the semibinar...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3996867/ https://www.ncbi.nlm.nih.gov/pubmed/24982934 http://dx.doi.org/10.1155/2014/254279 |
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author | Cardona, Gabriel Llabrés, Mercè Rosselló, Francesc Valiente, Gabriel |
author_facet | Cardona, Gabriel Llabrés, Mercè Rosselló, Francesc Valiente, Gabriel |
author_sort | Cardona, Gabriel |
collection | PubMed |
description | Several polynomial time computable metrics on the class of semibinary tree-sibling time consistent phylogenetic networks are available in the literature; in particular, the problem of deciding if two networks of this kind are isomorphic is in P. In this paper, we show that if we remove the semibinarity condition, then the problem becomes much harder. More precisely, we prove that the isomorphism problem for generic tree-sibling time consistent phylogenetic networks is polynomially equivalent to the graph isomorphism problem. Since the latter is believed not to belong to P, the chances are that it is impossible to define a metric on the class of all tree-sibling time consistent phylogenetic networks that can be computed in polynomial time. |
format | Online Article Text |
id | pubmed-3996867 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-39968672014-06-30 The Comparison of Tree-Sibling Time Consistent Phylogenetic Networks Is Graph Isomorphism-Complete Cardona, Gabriel Llabrés, Mercè Rosselló, Francesc Valiente, Gabriel ScientificWorldJournal Research Article Several polynomial time computable metrics on the class of semibinary tree-sibling time consistent phylogenetic networks are available in the literature; in particular, the problem of deciding if two networks of this kind are isomorphic is in P. In this paper, we show that if we remove the semibinarity condition, then the problem becomes much harder. More precisely, we prove that the isomorphism problem for generic tree-sibling time consistent phylogenetic networks is polynomially equivalent to the graph isomorphism problem. Since the latter is believed not to belong to P, the chances are that it is impossible to define a metric on the class of all tree-sibling time consistent phylogenetic networks that can be computed in polynomial time. Hindawi Publishing Corporation 2014 2014-04-02 /pmc/articles/PMC3996867/ /pubmed/24982934 http://dx.doi.org/10.1155/2014/254279 Text en Copyright © 2014 Gabriel Cardona et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Cardona, Gabriel Llabrés, Mercè Rosselló, Francesc Valiente, Gabriel The Comparison of Tree-Sibling Time Consistent Phylogenetic Networks Is Graph Isomorphism-Complete |
title | The Comparison of Tree-Sibling Time Consistent Phylogenetic Networks Is Graph Isomorphism-Complete |
title_full | The Comparison of Tree-Sibling Time Consistent Phylogenetic Networks Is Graph Isomorphism-Complete |
title_fullStr | The Comparison of Tree-Sibling Time Consistent Phylogenetic Networks Is Graph Isomorphism-Complete |
title_full_unstemmed | The Comparison of Tree-Sibling Time Consistent Phylogenetic Networks Is Graph Isomorphism-Complete |
title_short | The Comparison of Tree-Sibling Time Consistent Phylogenetic Networks Is Graph Isomorphism-Complete |
title_sort | comparison of tree-sibling time consistent phylogenetic networks is graph isomorphism-complete |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3996867/ https://www.ncbi.nlm.nih.gov/pubmed/24982934 http://dx.doi.org/10.1155/2014/254279 |
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