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CGAT: computational genomics analysis toolkit
Summary: Computational genomics seeks to draw biological inferences from genomic datasets, often by integrating and contextualizing next-generation sequencing data. CGAT provides an extensive suite of tools designed to assist in the analysis of genome scale data from a range of standard file formats...
| Autores principales: | , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2014
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998125/ https://www.ncbi.nlm.nih.gov/pubmed/24395753 http://dx.doi.org/10.1093/bioinformatics/btt756 |
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| author | Sims, David Ilott, Nicholas E. Sansom, Stephen N. Sudbery, Ian M. Johnson, Jethro S. Fawcett, Katherine A. Berlanga-Taylor, Antonio J. Luna-Valero, Sebastian Ponting, Chris P. Heger, Andreas |
| author_facet | Sims, David Ilott, Nicholas E. Sansom, Stephen N. Sudbery, Ian M. Johnson, Jethro S. Fawcett, Katherine A. Berlanga-Taylor, Antonio J. Luna-Valero, Sebastian Ponting, Chris P. Heger, Andreas |
| author_sort | Sims, David |
| collection | PubMed |
| description | Summary: Computational genomics seeks to draw biological inferences from genomic datasets, often by integrating and contextualizing next-generation sequencing data. CGAT provides an extensive suite of tools designed to assist in the analysis of genome scale data from a range of standard file formats. The toolkit enables filtering, comparison, conversion, summarization and annotation of genomic intervals, gene sets and sequences. The tools can both be run from the Unix command line and installed into visual workflow builders, such as Galaxy. Availability: The toolkit is freely available from http://github.com/CGATOxford/cgat Contact: andreas.heger@dpag.ox.ac.uk |
| format | Online Article Text |
| id | pubmed-3998125 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2014 |
| publisher | Oxford University Press |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-39981252014-04-24 CGAT: computational genomics analysis toolkit Sims, David Ilott, Nicholas E. Sansom, Stephen N. Sudbery, Ian M. Johnson, Jethro S. Fawcett, Katherine A. Berlanga-Taylor, Antonio J. Luna-Valero, Sebastian Ponting, Chris P. Heger, Andreas Bioinformatics Applications Notes Summary: Computational genomics seeks to draw biological inferences from genomic datasets, often by integrating and contextualizing next-generation sequencing data. CGAT provides an extensive suite of tools designed to assist in the analysis of genome scale data from a range of standard file formats. The toolkit enables filtering, comparison, conversion, summarization and annotation of genomic intervals, gene sets and sequences. The tools can both be run from the Unix command line and installed into visual workflow builders, such as Galaxy. Availability: The toolkit is freely available from http://github.com/CGATOxford/cgat Contact: andreas.heger@dpag.ox.ac.uk Oxford University Press 2014-05-01 2014-01-05 /pmc/articles/PMC3998125/ /pubmed/24395753 http://dx.doi.org/10.1093/bioinformatics/btt756 Text en © The Author 2014. Published by Oxford University Press. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Applications Notes Sims, David Ilott, Nicholas E. Sansom, Stephen N. Sudbery, Ian M. Johnson, Jethro S. Fawcett, Katherine A. Berlanga-Taylor, Antonio J. Luna-Valero, Sebastian Ponting, Chris P. Heger, Andreas CGAT: computational genomics analysis toolkit |
| title | CGAT: computational genomics analysis toolkit |
| title_full | CGAT: computational genomics analysis toolkit |
| title_fullStr | CGAT: computational genomics analysis toolkit |
| title_full_unstemmed | CGAT: computational genomics analysis toolkit |
| title_short | CGAT: computational genomics analysis toolkit |
| title_sort | cgat: computational genomics analysis toolkit |
| topic | Applications Notes |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998125/ https://www.ncbi.nlm.nih.gov/pubmed/24395753 http://dx.doi.org/10.1093/bioinformatics/btt756 |
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