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A Bayesian Approach for the Cox Proportional Hazards Model with Covariates Subject to Detection Limit
The research on biomarkers has been limited in its effectiveness because biomarker levels can only be measured within the thresholds of assays and laboratory instruments, a challenge referred to as a detection limit (DL) problem. In this paper, we propose a Bayesian approach to the Cox proportional...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998726/ https://www.ncbi.nlm.nih.gov/pubmed/24772198 http://dx.doi.org/10.6000/1929-6029.2014.03.01.5 |
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author | Chen, Qingxia Wu, Huiyun Ware, Lorraine B. Koyama, Tatsuki |
author_facet | Chen, Qingxia Wu, Huiyun Ware, Lorraine B. Koyama, Tatsuki |
author_sort | Chen, Qingxia |
collection | PubMed |
description | The research on biomarkers has been limited in its effectiveness because biomarker levels can only be measured within the thresholds of assays and laboratory instruments, a challenge referred to as a detection limit (DL) problem. In this paper, we propose a Bayesian approach to the Cox proportional hazards model with explanatory variables subject to lower, upper, or interval DLs. We demonstrate that by formulating the time-to-event outcome using the Poisson density with counting process notation, implementing the proposed approach in the OpenBUGS and JAGS is straightforward. We have conducted extensive simulations to compare the proposed Bayesian approach to the other four commonly used methods and to evaluate its robustness with respect to the distribution assumption of the biomarkers. The proposed Bayesian approach and other methods were applied to an acute lung injury study, in which a panel of cytokine biomarkers was studied for the biomarkers’ association with ventilation-free survival. |
format | Online Article Text |
id | pubmed-3998726 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
record_format | MEDLINE/PubMed |
spelling | pubmed-39987262014-04-24 A Bayesian Approach for the Cox Proportional Hazards Model with Covariates Subject to Detection Limit Chen, Qingxia Wu, Huiyun Ware, Lorraine B. Koyama, Tatsuki Int J Stat Med Res Article The research on biomarkers has been limited in its effectiveness because biomarker levels can only be measured within the thresholds of assays and laboratory instruments, a challenge referred to as a detection limit (DL) problem. In this paper, we propose a Bayesian approach to the Cox proportional hazards model with explanatory variables subject to lower, upper, or interval DLs. We demonstrate that by formulating the time-to-event outcome using the Poisson density with counting process notation, implementing the proposed approach in the OpenBUGS and JAGS is straightforward. We have conducted extensive simulations to compare the proposed Bayesian approach to the other four commonly used methods and to evaluate its robustness with respect to the distribution assumption of the biomarkers. The proposed Bayesian approach and other methods were applied to an acute lung injury study, in which a panel of cytokine biomarkers was studied for the biomarkers’ association with ventilation-free survival. 2014-01-31 /pmc/articles/PMC3998726/ /pubmed/24772198 http://dx.doi.org/10.6000/1929-6029.2014.03.01.5 Text en © 2014 Chen et al.; Licensee Lifescience Global. This is an open access article licensed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/) which permits unrestricted, non-commercial use, distribution and reproduction in any medium, provided the work is properly cited. |
spellingShingle | Article Chen, Qingxia Wu, Huiyun Ware, Lorraine B. Koyama, Tatsuki A Bayesian Approach for the Cox Proportional Hazards Model with Covariates Subject to Detection Limit |
title | A Bayesian Approach for the Cox Proportional Hazards Model with Covariates Subject to Detection Limit |
title_full | A Bayesian Approach for the Cox Proportional Hazards Model with Covariates Subject to Detection Limit |
title_fullStr | A Bayesian Approach for the Cox Proportional Hazards Model with Covariates Subject to Detection Limit |
title_full_unstemmed | A Bayesian Approach for the Cox Proportional Hazards Model with Covariates Subject to Detection Limit |
title_short | A Bayesian Approach for the Cox Proportional Hazards Model with Covariates Subject to Detection Limit |
title_sort | bayesian approach for the cox proportional hazards model with covariates subject to detection limit |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998726/ https://www.ncbi.nlm.nih.gov/pubmed/24772198 http://dx.doi.org/10.6000/1929-6029.2014.03.01.5 |
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