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Atherosclerotic Plaque Component Segmentation in Combined Carotid MRI and CTA Data Incorporating Class Label Uncertainty

Atherosclerotic plaque composition can indicate plaque vulnerability. We segment atherosclerotic plaque components from the carotid artery on a combination of in vivo MRI and CT-angiography (CTA) data using supervised voxelwise classification. In contrast to previous studies the ground truth for tra...

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Autores principales: van Engelen, Arna, Niessen, Wiro J., Klein, Stefan, Groen, Harald C., Verhagen, Hence J. M., Wentzel, Jolanda J., van der Lugt, Aad, de Bruijne, Marleen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3999092/
https://www.ncbi.nlm.nih.gov/pubmed/24762678
http://dx.doi.org/10.1371/journal.pone.0094840
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author van Engelen, Arna
Niessen, Wiro J.
Klein, Stefan
Groen, Harald C.
Verhagen, Hence J. M.
Wentzel, Jolanda J.
van der Lugt, Aad
de Bruijne, Marleen
author_facet van Engelen, Arna
Niessen, Wiro J.
Klein, Stefan
Groen, Harald C.
Verhagen, Hence J. M.
Wentzel, Jolanda J.
van der Lugt, Aad
de Bruijne, Marleen
author_sort van Engelen, Arna
collection PubMed
description Atherosclerotic plaque composition can indicate plaque vulnerability. We segment atherosclerotic plaque components from the carotid artery on a combination of in vivo MRI and CT-angiography (CTA) data using supervised voxelwise classification. In contrast to previous studies the ground truth for training is directly obtained from 3D registration with histology for fibrous and lipid-rich necrotic tissue, and with [Image: see text]CT for calcification. This registration does, however, not provide accurate voxelwise correspondence. We therefore evaluate three approaches that incorporate uncertainty in the ground truth used for training: I) soft labels are created by Gaussian blurring of the original binary histology segmentations to reduce weights at the boundaries between components, and are weighted by the estimated registration accuracy of the histology and in vivo imaging data (measured by overlap), II) samples are weighted by the local contour distance of the lumen and outer wall between histology and in vivo data, and III) 10% of each class is rejected by Gaussian outlier rejection. Classification was evaluated on the relative volumes (% of tissue type in the vessel wall) for calcified, fibrous and lipid-rich necrotic tissue, using linear discriminant (LDC) and support vector machine (SVM) classification. In addition, the combination of MRI and CTA data was compared to using only one imaging modality. Best results were obtained by LDC and outlier rejection: the volume error per vessel was 0.9[Image: see text]1.0% for calcification, 12.7[Image: see text]7.6% for fibrous and 12.1[Image: see text]8.1% for necrotic tissue, with Spearman rank correlation coefficients of 0.91 (calcification), 0.80 (fibrous) and 0.81 (necrotic). While segmentation using only MRI features yielded low accuracy for calcification, and segmentation using only CTA features yielded low accuracy for necrotic tissue, the combination of features from MRI and CTA gave good results for all studied components.
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spelling pubmed-39990922014-04-29 Atherosclerotic Plaque Component Segmentation in Combined Carotid MRI and CTA Data Incorporating Class Label Uncertainty van Engelen, Arna Niessen, Wiro J. Klein, Stefan Groen, Harald C. Verhagen, Hence J. M. Wentzel, Jolanda J. van der Lugt, Aad de Bruijne, Marleen PLoS One Research Article Atherosclerotic plaque composition can indicate plaque vulnerability. We segment atherosclerotic plaque components from the carotid artery on a combination of in vivo MRI and CT-angiography (CTA) data using supervised voxelwise classification. In contrast to previous studies the ground truth for training is directly obtained from 3D registration with histology for fibrous and lipid-rich necrotic tissue, and with [Image: see text]CT for calcification. This registration does, however, not provide accurate voxelwise correspondence. We therefore evaluate three approaches that incorporate uncertainty in the ground truth used for training: I) soft labels are created by Gaussian blurring of the original binary histology segmentations to reduce weights at the boundaries between components, and are weighted by the estimated registration accuracy of the histology and in vivo imaging data (measured by overlap), II) samples are weighted by the local contour distance of the lumen and outer wall between histology and in vivo data, and III) 10% of each class is rejected by Gaussian outlier rejection. Classification was evaluated on the relative volumes (% of tissue type in the vessel wall) for calcified, fibrous and lipid-rich necrotic tissue, using linear discriminant (LDC) and support vector machine (SVM) classification. In addition, the combination of MRI and CTA data was compared to using only one imaging modality. Best results were obtained by LDC and outlier rejection: the volume error per vessel was 0.9[Image: see text]1.0% for calcification, 12.7[Image: see text]7.6% for fibrous and 12.1[Image: see text]8.1% for necrotic tissue, with Spearman rank correlation coefficients of 0.91 (calcification), 0.80 (fibrous) and 0.81 (necrotic). While segmentation using only MRI features yielded low accuracy for calcification, and segmentation using only CTA features yielded low accuracy for necrotic tissue, the combination of features from MRI and CTA gave good results for all studied components. Public Library of Science 2014-04-24 /pmc/articles/PMC3999092/ /pubmed/24762678 http://dx.doi.org/10.1371/journal.pone.0094840 Text en © 2014 van Engelen et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
van Engelen, Arna
Niessen, Wiro J.
Klein, Stefan
Groen, Harald C.
Verhagen, Hence J. M.
Wentzel, Jolanda J.
van der Lugt, Aad
de Bruijne, Marleen
Atherosclerotic Plaque Component Segmentation in Combined Carotid MRI and CTA Data Incorporating Class Label Uncertainty
title Atherosclerotic Plaque Component Segmentation in Combined Carotid MRI and CTA Data Incorporating Class Label Uncertainty
title_full Atherosclerotic Plaque Component Segmentation in Combined Carotid MRI and CTA Data Incorporating Class Label Uncertainty
title_fullStr Atherosclerotic Plaque Component Segmentation in Combined Carotid MRI and CTA Data Incorporating Class Label Uncertainty
title_full_unstemmed Atherosclerotic Plaque Component Segmentation in Combined Carotid MRI and CTA Data Incorporating Class Label Uncertainty
title_short Atherosclerotic Plaque Component Segmentation in Combined Carotid MRI and CTA Data Incorporating Class Label Uncertainty
title_sort atherosclerotic plaque component segmentation in combined carotid mri and cta data incorporating class label uncertainty
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3999092/
https://www.ncbi.nlm.nih.gov/pubmed/24762678
http://dx.doi.org/10.1371/journal.pone.0094840
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