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Can We Identify Non-Stationary Dynamics of Trial-to-Trial Variability?
Identifying sources of the apparent variability in non-stationary scenarios is a fundamental problem in many biological data analysis settings. For instance, neurophysiological responses to the same task often vary from each repetition of the same experiment (trial) to the next. The origin and funct...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4000201/ https://www.ncbi.nlm.nih.gov/pubmed/24769735 http://dx.doi.org/10.1371/journal.pone.0095648 |
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author | Balaguer-Ballester, Emili Tabas-Diaz, Alejandro Budka, Marcin |
author_facet | Balaguer-Ballester, Emili Tabas-Diaz, Alejandro Budka, Marcin |
author_sort | Balaguer-Ballester, Emili |
collection | PubMed |
description | Identifying sources of the apparent variability in non-stationary scenarios is a fundamental problem in many biological data analysis settings. For instance, neurophysiological responses to the same task often vary from each repetition of the same experiment (trial) to the next. The origin and functional role of this observed variability is one of the fundamental questions in neuroscience. The nature of such trial-to-trial dynamics however remains largely elusive to current data analysis approaches. A range of strategies have been proposed in modalities such as electro-encephalography but gaining a fundamental insight into latent sources of trial-to-trial variability in neural recordings is still a major challenge. In this paper, we present a proof-of-concept study to the analysis of trial-to-trial variability dynamics founded on non-autonomous dynamical systems. At this initial stage, we evaluate the capacity of a simple statistic based on the behaviour of trajectories in classification settings, the trajectory coherence, in order to identify trial-to-trial dynamics. First, we derive the conditions leading to observable changes in datasets generated by a compact dynamical system (the Duffing equation). This canonical system plays the role of a ubiquitous model of non-stationary supervised classification problems. Second, we estimate the coherence of class-trajectories in empirically reconstructed space of system states. We show how this analysis can discern variations attributable to non-autonomous deterministic processes from stochastic fluctuations. The analyses are benchmarked using simulated and two different real datasets which have been shown to exhibit attractor dynamics. As an illustrative example, we focused on the analysis of the rat's frontal cortex ensemble dynamics during a decision-making task. Results suggest that, in line with recent hypotheses, rather than internal noise, it is the deterministic trend which most likely underlies the observed trial-to-trial variability. Thus, the empirical tool developed within this study potentially allows us to infer the source of variability in in-vivo neural recordings. |
format | Online Article Text |
id | pubmed-4000201 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-40002012014-04-29 Can We Identify Non-Stationary Dynamics of Trial-to-Trial Variability? Balaguer-Ballester, Emili Tabas-Diaz, Alejandro Budka, Marcin PLoS One Research Article Identifying sources of the apparent variability in non-stationary scenarios is a fundamental problem in many biological data analysis settings. For instance, neurophysiological responses to the same task often vary from each repetition of the same experiment (trial) to the next. The origin and functional role of this observed variability is one of the fundamental questions in neuroscience. The nature of such trial-to-trial dynamics however remains largely elusive to current data analysis approaches. A range of strategies have been proposed in modalities such as electro-encephalography but gaining a fundamental insight into latent sources of trial-to-trial variability in neural recordings is still a major challenge. In this paper, we present a proof-of-concept study to the analysis of trial-to-trial variability dynamics founded on non-autonomous dynamical systems. At this initial stage, we evaluate the capacity of a simple statistic based on the behaviour of trajectories in classification settings, the trajectory coherence, in order to identify trial-to-trial dynamics. First, we derive the conditions leading to observable changes in datasets generated by a compact dynamical system (the Duffing equation). This canonical system plays the role of a ubiquitous model of non-stationary supervised classification problems. Second, we estimate the coherence of class-trajectories in empirically reconstructed space of system states. We show how this analysis can discern variations attributable to non-autonomous deterministic processes from stochastic fluctuations. The analyses are benchmarked using simulated and two different real datasets which have been shown to exhibit attractor dynamics. As an illustrative example, we focused on the analysis of the rat's frontal cortex ensemble dynamics during a decision-making task. Results suggest that, in line with recent hypotheses, rather than internal noise, it is the deterministic trend which most likely underlies the observed trial-to-trial variability. Thus, the empirical tool developed within this study potentially allows us to infer the source of variability in in-vivo neural recordings. Public Library of Science 2014-04-25 /pmc/articles/PMC4000201/ /pubmed/24769735 http://dx.doi.org/10.1371/journal.pone.0095648 Text en © 2014 Balaguer-Ballester et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Balaguer-Ballester, Emili Tabas-Diaz, Alejandro Budka, Marcin Can We Identify Non-Stationary Dynamics of Trial-to-Trial Variability? |
title | Can We Identify Non-Stationary Dynamics of Trial-to-Trial Variability? |
title_full | Can We Identify Non-Stationary Dynamics of Trial-to-Trial Variability? |
title_fullStr | Can We Identify Non-Stationary Dynamics of Trial-to-Trial Variability? |
title_full_unstemmed | Can We Identify Non-Stationary Dynamics of Trial-to-Trial Variability? |
title_short | Can We Identify Non-Stationary Dynamics of Trial-to-Trial Variability? |
title_sort | can we identify non-stationary dynamics of trial-to-trial variability? |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4000201/ https://www.ncbi.nlm.nih.gov/pubmed/24769735 http://dx.doi.org/10.1371/journal.pone.0095648 |
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