Cargando…

Electronic health records for biological sample collection: feasibility study of statin-induced myopathy using the Clinical Practice Research Datalink

AIMS: Electronic healthcare records (EHRs) are increasingly used to store clinical information. A secondary benefit of EHRs is their use, in an anonymized form, for observational research. The Clinical Practice Research Datalink (CPRD) contains EHRs from primary care in the UK and, despite 1083 peer...

Descripción completa

Detalles Bibliográficos
Autores principales: O'Meara, Helen, Carr, Daniel F, Evely, Jane, Hobbs, Mark, McCann, Gerard, van Staa, Tjeerd, Pirmohamed, Munir
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons Ltd 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4004403/
https://www.ncbi.nlm.nih.gov/pubmed/24308359
http://dx.doi.org/10.1111/bcp.12269
_version_ 1782313970902761472
author O'Meara, Helen
Carr, Daniel F
Evely, Jane
Hobbs, Mark
McCann, Gerard
van Staa, Tjeerd
Pirmohamed, Munir
author_facet O'Meara, Helen
Carr, Daniel F
Evely, Jane
Hobbs, Mark
McCann, Gerard
van Staa, Tjeerd
Pirmohamed, Munir
author_sort O'Meara, Helen
collection PubMed
description AIMS: Electronic healthcare records (EHRs) are increasingly used to store clinical information. A secondary benefit of EHRs is their use, in an anonymized form, for observational research. The Clinical Practice Research Datalink (CPRD) contains EHRs from primary care in the UK and, despite 1083 peer-reviewed research publications, has never been used to obtain pharmacogenetic samples. Using a statin-induced myopathy paradigm, we evaluated using the CPRD to obtain patient samples for a pharmacogenetic study targeting 250 cases and 500 controls from UK general practitioner (GP) practices. METHODS: The CPRD identified potential patients fitting specific case-definition criteria (active rhabdomyolysis or creatine phosphokinase > four times the upper limit of normal), and corresponding GP practices were asked to invite patient participation. Consenting patients were requested to provide either saliva or blood samples and to complete an ethnicity questionnaire. Control subjects were recruited from the same GP practice (saliva) or a small number of practices (blood). Samples were forwarded for DNA extraction. RESULTS: Thirty-six months of recruitment yielded DNA samples from 149 statin-induced myopathy cases and 587 tolerant controls. Data show that contacting patients through their GP is a reliable method for obtaining samples without compromising anonymity. Saliva collection directly from patients was considerably less effective than blood sampling. After 10 months of recruitment, saliva sampling was suspended in favour of blood sampling. CONCLUSIONS: We demonstrate the potential of EHRs for identifying accurately phenotyped cases and controls for pharmacogenetic studies. Recruitment was successful only because of the willingness of GP practices to participate and the existence of strong doctor–patient relationships. The present study provides a model that can be implemented in future genetic analyses using EHRs.
format Online
Article
Text
id pubmed-4004403
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher John Wiley & Sons Ltd
record_format MEDLINE/PubMed
spelling pubmed-40044032015-03-25 Electronic health records for biological sample collection: feasibility study of statin-induced myopathy using the Clinical Practice Research Datalink O'Meara, Helen Carr, Daniel F Evely, Jane Hobbs, Mark McCann, Gerard van Staa, Tjeerd Pirmohamed, Munir Br J Clin Pharmacol Pharmacogenetics AIMS: Electronic healthcare records (EHRs) are increasingly used to store clinical information. A secondary benefit of EHRs is their use, in an anonymized form, for observational research. The Clinical Practice Research Datalink (CPRD) contains EHRs from primary care in the UK and, despite 1083 peer-reviewed research publications, has never been used to obtain pharmacogenetic samples. Using a statin-induced myopathy paradigm, we evaluated using the CPRD to obtain patient samples for a pharmacogenetic study targeting 250 cases and 500 controls from UK general practitioner (GP) practices. METHODS: The CPRD identified potential patients fitting specific case-definition criteria (active rhabdomyolysis or creatine phosphokinase > four times the upper limit of normal), and corresponding GP practices were asked to invite patient participation. Consenting patients were requested to provide either saliva or blood samples and to complete an ethnicity questionnaire. Control subjects were recruited from the same GP practice (saliva) or a small number of practices (blood). Samples were forwarded for DNA extraction. RESULTS: Thirty-six months of recruitment yielded DNA samples from 149 statin-induced myopathy cases and 587 tolerant controls. Data show that contacting patients through their GP is a reliable method for obtaining samples without compromising anonymity. Saliva collection directly from patients was considerably less effective than blood sampling. After 10 months of recruitment, saliva sampling was suspended in favour of blood sampling. CONCLUSIONS: We demonstrate the potential of EHRs for identifying accurately phenotyped cases and controls for pharmacogenetic studies. Recruitment was successful only because of the willingness of GP practices to participate and the existence of strong doctor–patient relationships. The present study provides a model that can be implemented in future genetic analyses using EHRs. John Wiley & Sons Ltd 2014-05 2014-04-22 /pmc/articles/PMC4004403/ /pubmed/24308359 http://dx.doi.org/10.1111/bcp.12269 Text en © 2013 The Authors. British Journal of Clinical Pharmacology published by John Wiley & Sons Ltd on behalf of The British Pharmacological Society. http://creativecommons.org/licenses/by/3.0/ This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Pharmacogenetics
O'Meara, Helen
Carr, Daniel F
Evely, Jane
Hobbs, Mark
McCann, Gerard
van Staa, Tjeerd
Pirmohamed, Munir
Electronic health records for biological sample collection: feasibility study of statin-induced myopathy using the Clinical Practice Research Datalink
title Electronic health records for biological sample collection: feasibility study of statin-induced myopathy using the Clinical Practice Research Datalink
title_full Electronic health records for biological sample collection: feasibility study of statin-induced myopathy using the Clinical Practice Research Datalink
title_fullStr Electronic health records for biological sample collection: feasibility study of statin-induced myopathy using the Clinical Practice Research Datalink
title_full_unstemmed Electronic health records for biological sample collection: feasibility study of statin-induced myopathy using the Clinical Practice Research Datalink
title_short Electronic health records for biological sample collection: feasibility study of statin-induced myopathy using the Clinical Practice Research Datalink
title_sort electronic health records for biological sample collection: feasibility study of statin-induced myopathy using the clinical practice research datalink
topic Pharmacogenetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4004403/
https://www.ncbi.nlm.nih.gov/pubmed/24308359
http://dx.doi.org/10.1111/bcp.12269
work_keys_str_mv AT omearahelen electronichealthrecordsforbiologicalsamplecollectionfeasibilitystudyofstatininducedmyopathyusingtheclinicalpracticeresearchdatalink
AT carrdanielf electronichealthrecordsforbiologicalsamplecollectionfeasibilitystudyofstatininducedmyopathyusingtheclinicalpracticeresearchdatalink
AT evelyjane electronichealthrecordsforbiologicalsamplecollectionfeasibilitystudyofstatininducedmyopathyusingtheclinicalpracticeresearchdatalink
AT hobbsmark electronichealthrecordsforbiologicalsamplecollectionfeasibilitystudyofstatininducedmyopathyusingtheclinicalpracticeresearchdatalink
AT mccanngerard electronichealthrecordsforbiologicalsamplecollectionfeasibilitystudyofstatininducedmyopathyusingtheclinicalpracticeresearchdatalink
AT vanstaatjeerd electronichealthrecordsforbiologicalsamplecollectionfeasibilitystudyofstatininducedmyopathyusingtheclinicalpracticeresearchdatalink
AT pirmohamedmunir electronichealthrecordsforbiologicalsamplecollectionfeasibilitystudyofstatininducedmyopathyusingtheclinicalpracticeresearchdatalink