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Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri

Ontologies provide an important resource to integrate information. For developmental biology and comparative anatomy studies, ontologies of a species are used to formalize and annotate data that are related to anatomical structures, their lineage and timing of development. Here, we have constructed...

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Autores principales: Manni, Lucia, Gasparini, Fabio, Hotta, Kohji, Ishizuka, Katherine J., Ricci, Lorenzo, Tiozzo, Stefano, Voskoboynik, Ayelet, Dauga, Delphine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006837/
https://www.ncbi.nlm.nih.gov/pubmed/24789338
http://dx.doi.org/10.1371/journal.pone.0096434
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author Manni, Lucia
Gasparini, Fabio
Hotta, Kohji
Ishizuka, Katherine J.
Ricci, Lorenzo
Tiozzo, Stefano
Voskoboynik, Ayelet
Dauga, Delphine
author_facet Manni, Lucia
Gasparini, Fabio
Hotta, Kohji
Ishizuka, Katherine J.
Ricci, Lorenzo
Tiozzo, Stefano
Voskoboynik, Ayelet
Dauga, Delphine
author_sort Manni, Lucia
collection PubMed
description Ontologies provide an important resource to integrate information. For developmental biology and comparative anatomy studies, ontologies of a species are used to formalize and annotate data that are related to anatomical structures, their lineage and timing of development. Here, we have constructed the first ontology for anatomy and asexual development (blastogenesis) of a bilaterian, the colonial tunicate Botryllus schlosseri. Tunicates, like Botryllus schlosseri, are non-vertebrates and the only chordate taxon species that reproduce both sexually and asexually. Their tadpole larval stage possesses structures characteristic of all chordates, i.e. a notochord, a dorsal neural tube, and gill slits. Larvae settle and metamorphose into individuals that are either solitary or colonial. The latter reproduce both sexually and asexually and these two reproductive modes lead to essentially the same adult body plan. The Botryllus schlosseri Ontology of Development and Anatomy (BODA) will facilitate the comparison between both types of development. BODA uses the rules defined by the Open Biomedical Ontologies Foundry. It is based on studies that investigate the anatomy, blastogenesis and regeneration of this organism. BODA features allow the users to easily search and identify anatomical structures in the colony, to define the developmental stage, and to follow the morphogenetic events of a tissue and/or organ of interest throughout asexual development. We invite the scientific community to use this resource as a reference for the anatomy and developmental ontology of B. schlosseri and encourage recommendations for updates and improvements.
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spelling pubmed-40068372014-05-09 Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri Manni, Lucia Gasparini, Fabio Hotta, Kohji Ishizuka, Katherine J. Ricci, Lorenzo Tiozzo, Stefano Voskoboynik, Ayelet Dauga, Delphine PLoS One Research Article Ontologies provide an important resource to integrate information. For developmental biology and comparative anatomy studies, ontologies of a species are used to formalize and annotate data that are related to anatomical structures, their lineage and timing of development. Here, we have constructed the first ontology for anatomy and asexual development (blastogenesis) of a bilaterian, the colonial tunicate Botryllus schlosseri. Tunicates, like Botryllus schlosseri, are non-vertebrates and the only chordate taxon species that reproduce both sexually and asexually. Their tadpole larval stage possesses structures characteristic of all chordates, i.e. a notochord, a dorsal neural tube, and gill slits. Larvae settle and metamorphose into individuals that are either solitary or colonial. The latter reproduce both sexually and asexually and these two reproductive modes lead to essentially the same adult body plan. The Botryllus schlosseri Ontology of Development and Anatomy (BODA) will facilitate the comparison between both types of development. BODA uses the rules defined by the Open Biomedical Ontologies Foundry. It is based on studies that investigate the anatomy, blastogenesis and regeneration of this organism. BODA features allow the users to easily search and identify anatomical structures in the colony, to define the developmental stage, and to follow the morphogenetic events of a tissue and/or organ of interest throughout asexual development. We invite the scientific community to use this resource as a reference for the anatomy and developmental ontology of B. schlosseri and encourage recommendations for updates and improvements. Public Library of Science 2014-05-01 /pmc/articles/PMC4006837/ /pubmed/24789338 http://dx.doi.org/10.1371/journal.pone.0096434 Text en © 2014 Manni et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Manni, Lucia
Gasparini, Fabio
Hotta, Kohji
Ishizuka, Katherine J.
Ricci, Lorenzo
Tiozzo, Stefano
Voskoboynik, Ayelet
Dauga, Delphine
Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
title Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
title_full Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
title_fullStr Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
title_full_unstemmed Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
title_short Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
title_sort ontology for the asexual development and anatomy of the colonial chordate botryllus schlosseri
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006837/
https://www.ncbi.nlm.nih.gov/pubmed/24789338
http://dx.doi.org/10.1371/journal.pone.0096434
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