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Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
Ontologies provide an important resource to integrate information. For developmental biology and comparative anatomy studies, ontologies of a species are used to formalize and annotate data that are related to anatomical structures, their lineage and timing of development. Here, we have constructed...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006837/ https://www.ncbi.nlm.nih.gov/pubmed/24789338 http://dx.doi.org/10.1371/journal.pone.0096434 |
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author | Manni, Lucia Gasparini, Fabio Hotta, Kohji Ishizuka, Katherine J. Ricci, Lorenzo Tiozzo, Stefano Voskoboynik, Ayelet Dauga, Delphine |
author_facet | Manni, Lucia Gasparini, Fabio Hotta, Kohji Ishizuka, Katherine J. Ricci, Lorenzo Tiozzo, Stefano Voskoboynik, Ayelet Dauga, Delphine |
author_sort | Manni, Lucia |
collection | PubMed |
description | Ontologies provide an important resource to integrate information. For developmental biology and comparative anatomy studies, ontologies of a species are used to formalize and annotate data that are related to anatomical structures, their lineage and timing of development. Here, we have constructed the first ontology for anatomy and asexual development (blastogenesis) of a bilaterian, the colonial tunicate Botryllus schlosseri. Tunicates, like Botryllus schlosseri, are non-vertebrates and the only chordate taxon species that reproduce both sexually and asexually. Their tadpole larval stage possesses structures characteristic of all chordates, i.e. a notochord, a dorsal neural tube, and gill slits. Larvae settle and metamorphose into individuals that are either solitary or colonial. The latter reproduce both sexually and asexually and these two reproductive modes lead to essentially the same adult body plan. The Botryllus schlosseri Ontology of Development and Anatomy (BODA) will facilitate the comparison between both types of development. BODA uses the rules defined by the Open Biomedical Ontologies Foundry. It is based on studies that investigate the anatomy, blastogenesis and regeneration of this organism. BODA features allow the users to easily search and identify anatomical structures in the colony, to define the developmental stage, and to follow the morphogenetic events of a tissue and/or organ of interest throughout asexual development. We invite the scientific community to use this resource as a reference for the anatomy and developmental ontology of B. schlosseri and encourage recommendations for updates and improvements. |
format | Online Article Text |
id | pubmed-4006837 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-40068372014-05-09 Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri Manni, Lucia Gasparini, Fabio Hotta, Kohji Ishizuka, Katherine J. Ricci, Lorenzo Tiozzo, Stefano Voskoboynik, Ayelet Dauga, Delphine PLoS One Research Article Ontologies provide an important resource to integrate information. For developmental biology and comparative anatomy studies, ontologies of a species are used to formalize and annotate data that are related to anatomical structures, their lineage and timing of development. Here, we have constructed the first ontology for anatomy and asexual development (blastogenesis) of a bilaterian, the colonial tunicate Botryllus schlosseri. Tunicates, like Botryllus schlosseri, are non-vertebrates and the only chordate taxon species that reproduce both sexually and asexually. Their tadpole larval stage possesses structures characteristic of all chordates, i.e. a notochord, a dorsal neural tube, and gill slits. Larvae settle and metamorphose into individuals that are either solitary or colonial. The latter reproduce both sexually and asexually and these two reproductive modes lead to essentially the same adult body plan. The Botryllus schlosseri Ontology of Development and Anatomy (BODA) will facilitate the comparison between both types of development. BODA uses the rules defined by the Open Biomedical Ontologies Foundry. It is based on studies that investigate the anatomy, blastogenesis and regeneration of this organism. BODA features allow the users to easily search and identify anatomical structures in the colony, to define the developmental stage, and to follow the morphogenetic events of a tissue and/or organ of interest throughout asexual development. We invite the scientific community to use this resource as a reference for the anatomy and developmental ontology of B. schlosseri and encourage recommendations for updates and improvements. Public Library of Science 2014-05-01 /pmc/articles/PMC4006837/ /pubmed/24789338 http://dx.doi.org/10.1371/journal.pone.0096434 Text en © 2014 Manni et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Manni, Lucia Gasparini, Fabio Hotta, Kohji Ishizuka, Katherine J. Ricci, Lorenzo Tiozzo, Stefano Voskoboynik, Ayelet Dauga, Delphine Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri |
title | Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
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title_full | Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
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title_fullStr | Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
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title_full_unstemmed | Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
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title_short | Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
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title_sort | ontology for the asexual development and anatomy of the colonial chordate botryllus schlosseri |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006837/ https://www.ncbi.nlm.nih.gov/pubmed/24789338 http://dx.doi.org/10.1371/journal.pone.0096434 |
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