Cargando…
SHEAR: sample heterogeneity estimation and assembly by reference
BACKGROUND: Personal genome assembly is a critical process when studying tumor genomes and other highly divergent sequences. The accuracy of downstream analyses, such as RNA-seq and ChIP-seq, can be greatly enhanced by using personal genomic sequences rather than standard references. Unfortunately,...
Autores principales: | Landman, Sean R, Hwang, Tae Hyun, Silverstein, Kevin AT, Li, Yingming, Dehm, Scott M, Steinbach, Michael, Kumar, Vipin |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4007568/ https://www.ncbi.nlm.nih.gov/pubmed/24476358 http://dx.doi.org/10.1186/1471-2164-15-84 |
Ejemplares similares
-
Indel detection from DNA and RNA sequencing data with transIndel
por: Yang, Rendong, et al.
Publicado: (2018) -
Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS data
por: Aflitos, Saulo Alves, et al.
Publicado: (2015) -
SV-STAT accurately detects structural variation via alignment to reference-based assemblies
por: Davis, Caleb F., et al.
Publicado: (2016) -
NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly
por: McCorrison, Jamison M, et al.
Publicado: (2014) -
RnaSeqSampleSize: real data based sample size estimation for RNA sequencing
por: Zhao, Shilin, et al.
Publicado: (2018)