Cargando…

Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses

BACKGROUND: The phylogenetic relationships of many taxa remain poorly known because of a lack of appropriate data and/or analyses. Despite substantial recent advances, amphibian phylogeny remains poorly resolved in many instances. The phylogenetic relationships of the Ethiopian endemic monotypic gen...

Descripción completa

Detalles Bibliográficos
Autores principales: Siu-Ting, Karen, Gower, David J, Pisani, Davide, Kassahun, Roman, Gebresenbet, Fikirte, Menegon, Michele, Mengistu, Abebe A, Saber, Samy A, de Sá, Rafael, Wilkinson, Mark, Loader, Simon P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008257/
https://www.ncbi.nlm.nih.gov/pubmed/24612655
http://dx.doi.org/10.1186/1471-2148-14-44
_version_ 1782314414292074496
author Siu-Ting, Karen
Gower, David J
Pisani, Davide
Kassahun, Roman
Gebresenbet, Fikirte
Menegon, Michele
Mengistu, Abebe A
Saber, Samy A
de Sá, Rafael
Wilkinson, Mark
Loader, Simon P
author_facet Siu-Ting, Karen
Gower, David J
Pisani, Davide
Kassahun, Roman
Gebresenbet, Fikirte
Menegon, Michele
Mengistu, Abebe A
Saber, Samy A
de Sá, Rafael
Wilkinson, Mark
Loader, Simon P
author_sort Siu-Ting, Karen
collection PubMed
description BACKGROUND: The phylogenetic relationships of many taxa remain poorly known because of a lack of appropriate data and/or analyses. Despite substantial recent advances, amphibian phylogeny remains poorly resolved in many instances. The phylogenetic relationships of the Ethiopian endemic monotypic genus Ericabatrachus has been addressed thus far only with phenotypic data and remains contentious. RESULTS: We obtained fresh samples of the now rare and Critically Endangered Ericabatrachus baleensis and generated DNA sequences for two mitochondrial and four nuclear genes. Analyses of these new data using de novo and constrained-tree phylogenetic reconstructions strongly support a close relationship between Ericabatrachus and Petropedetes, and allow us to reject previously proposed alternative hypotheses of a close relationship with cacosternines or Phrynobatrachus. CONCLUSIONS: We discuss the implications of our results for the taxonomy, biogeography and conservation of E. baleensis, and suggest a two-tiered approach to the inclusion and analyses of new data in order to assess the phylogenetic relationships of previously unsampled taxa. Such approaches will be important in the future given the increasing availability of relevant mega-alignments and potential framework phylogenies.
format Online
Article
Text
id pubmed-4008257
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-40082572014-05-03 Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses Siu-Ting, Karen Gower, David J Pisani, Davide Kassahun, Roman Gebresenbet, Fikirte Menegon, Michele Mengistu, Abebe A Saber, Samy A de Sá, Rafael Wilkinson, Mark Loader, Simon P BMC Evol Biol Research Article BACKGROUND: The phylogenetic relationships of many taxa remain poorly known because of a lack of appropriate data and/or analyses. Despite substantial recent advances, amphibian phylogeny remains poorly resolved in many instances. The phylogenetic relationships of the Ethiopian endemic monotypic genus Ericabatrachus has been addressed thus far only with phenotypic data and remains contentious. RESULTS: We obtained fresh samples of the now rare and Critically Endangered Ericabatrachus baleensis and generated DNA sequences for two mitochondrial and four nuclear genes. Analyses of these new data using de novo and constrained-tree phylogenetic reconstructions strongly support a close relationship between Ericabatrachus and Petropedetes, and allow us to reject previously proposed alternative hypotheses of a close relationship with cacosternines or Phrynobatrachus. CONCLUSIONS: We discuss the implications of our results for the taxonomy, biogeography and conservation of E. baleensis, and suggest a two-tiered approach to the inclusion and analyses of new data in order to assess the phylogenetic relationships of previously unsampled taxa. Such approaches will be important in the future given the increasing availability of relevant mega-alignments and potential framework phylogenies. BioMed Central 2014-03-10 /pmc/articles/PMC4008257/ /pubmed/24612655 http://dx.doi.org/10.1186/1471-2148-14-44 Text en Copyright © 2014 Siu-Ting et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Siu-Ting, Karen
Gower, David J
Pisani, Davide
Kassahun, Roman
Gebresenbet, Fikirte
Menegon, Michele
Mengistu, Abebe A
Saber, Samy A
de Sá, Rafael
Wilkinson, Mark
Loader, Simon P
Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses
title Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses
title_full Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses
title_fullStr Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses
title_full_unstemmed Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses
title_short Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses
title_sort evolutionary relationships of the critically endangered frog ericabatrachus baleensis largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008257/
https://www.ncbi.nlm.nih.gov/pubmed/24612655
http://dx.doi.org/10.1186/1471-2148-14-44
work_keys_str_mv AT siutingkaren evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses
AT gowerdavidj evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses
AT pisanidavide evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses
AT kassahunroman evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses
AT gebresenbetfikirte evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses
AT menegonmichele evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses
AT mengistuabebea evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses
AT sabersamya evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses
AT desarafael evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses
AT wilkinsonmark evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses
AT loadersimonp evolutionaryrelationshipsofthecriticallyendangeredfrogericabatrachusbaleensislargen1991withnotesonincorporatingpreviouslyunsampledtaxaintolargescalephylogeneticanalyses