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Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses
BACKGROUND: The phylogenetic relationships of many taxa remain poorly known because of a lack of appropriate data and/or analyses. Despite substantial recent advances, amphibian phylogeny remains poorly resolved in many instances. The phylogenetic relationships of the Ethiopian endemic monotypic gen...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008257/ https://www.ncbi.nlm.nih.gov/pubmed/24612655 http://dx.doi.org/10.1186/1471-2148-14-44 |
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author | Siu-Ting, Karen Gower, David J Pisani, Davide Kassahun, Roman Gebresenbet, Fikirte Menegon, Michele Mengistu, Abebe A Saber, Samy A de Sá, Rafael Wilkinson, Mark Loader, Simon P |
author_facet | Siu-Ting, Karen Gower, David J Pisani, Davide Kassahun, Roman Gebresenbet, Fikirte Menegon, Michele Mengistu, Abebe A Saber, Samy A de Sá, Rafael Wilkinson, Mark Loader, Simon P |
author_sort | Siu-Ting, Karen |
collection | PubMed |
description | BACKGROUND: The phylogenetic relationships of many taxa remain poorly known because of a lack of appropriate data and/or analyses. Despite substantial recent advances, amphibian phylogeny remains poorly resolved in many instances. The phylogenetic relationships of the Ethiopian endemic monotypic genus Ericabatrachus has been addressed thus far only with phenotypic data and remains contentious. RESULTS: We obtained fresh samples of the now rare and Critically Endangered Ericabatrachus baleensis and generated DNA sequences for two mitochondrial and four nuclear genes. Analyses of these new data using de novo and constrained-tree phylogenetic reconstructions strongly support a close relationship between Ericabatrachus and Petropedetes, and allow us to reject previously proposed alternative hypotheses of a close relationship with cacosternines or Phrynobatrachus. CONCLUSIONS: We discuss the implications of our results for the taxonomy, biogeography and conservation of E. baleensis, and suggest a two-tiered approach to the inclusion and analyses of new data in order to assess the phylogenetic relationships of previously unsampled taxa. Such approaches will be important in the future given the increasing availability of relevant mega-alignments and potential framework phylogenies. |
format | Online Article Text |
id | pubmed-4008257 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-40082572014-05-03 Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses Siu-Ting, Karen Gower, David J Pisani, Davide Kassahun, Roman Gebresenbet, Fikirte Menegon, Michele Mengistu, Abebe A Saber, Samy A de Sá, Rafael Wilkinson, Mark Loader, Simon P BMC Evol Biol Research Article BACKGROUND: The phylogenetic relationships of many taxa remain poorly known because of a lack of appropriate data and/or analyses. Despite substantial recent advances, amphibian phylogeny remains poorly resolved in many instances. The phylogenetic relationships of the Ethiopian endemic monotypic genus Ericabatrachus has been addressed thus far only with phenotypic data and remains contentious. RESULTS: We obtained fresh samples of the now rare and Critically Endangered Ericabatrachus baleensis and generated DNA sequences for two mitochondrial and four nuclear genes. Analyses of these new data using de novo and constrained-tree phylogenetic reconstructions strongly support a close relationship between Ericabatrachus and Petropedetes, and allow us to reject previously proposed alternative hypotheses of a close relationship with cacosternines or Phrynobatrachus. CONCLUSIONS: We discuss the implications of our results for the taxonomy, biogeography and conservation of E. baleensis, and suggest a two-tiered approach to the inclusion and analyses of new data in order to assess the phylogenetic relationships of previously unsampled taxa. Such approaches will be important in the future given the increasing availability of relevant mega-alignments and potential framework phylogenies. BioMed Central 2014-03-10 /pmc/articles/PMC4008257/ /pubmed/24612655 http://dx.doi.org/10.1186/1471-2148-14-44 Text en Copyright © 2014 Siu-Ting et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Siu-Ting, Karen Gower, David J Pisani, Davide Kassahun, Roman Gebresenbet, Fikirte Menegon, Michele Mengistu, Abebe A Saber, Samy A de Sá, Rafael Wilkinson, Mark Loader, Simon P Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses |
title | Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses |
title_full | Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses |
title_fullStr | Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses |
title_full_unstemmed | Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses |
title_short | Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensis Largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses |
title_sort | evolutionary relationships of the critically endangered frog ericabatrachus baleensis largen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008257/ https://www.ncbi.nlm.nih.gov/pubmed/24612655 http://dx.doi.org/10.1186/1471-2148-14-44 |
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