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Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis
The somatic mutation burden in healthy white blood cells (WBCs) is not well known. Based on deep whole-genome sequencing, we estimate that approximately 450 somatic mutations accumulated in the nonrepetitive genome within the healthy blood compartment of a 115-yr-old woman. The detected mutations ap...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009603/ https://www.ncbi.nlm.nih.gov/pubmed/24760347 http://dx.doi.org/10.1101/gr.162131.113 |
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author | Holstege, Henne Pfeiffer, Wayne Sie, Daoud Hulsman, Marc Nicholas, Thomas J. Lee, Clarence C. Ross, Tristen Lin, Jue Miller, Mark A. Ylstra, Bauke Meijers-Heijboer, Hanne Brugman, Martijn H. Staal, Frank J.T. Holstege, Gert Reinders, Marcel J.T. Harkins, Timothy T. Levy, Samuel Sistermans, Erik A. |
author_facet | Holstege, Henne Pfeiffer, Wayne Sie, Daoud Hulsman, Marc Nicholas, Thomas J. Lee, Clarence C. Ross, Tristen Lin, Jue Miller, Mark A. Ylstra, Bauke Meijers-Heijboer, Hanne Brugman, Martijn H. Staal, Frank J.T. Holstege, Gert Reinders, Marcel J.T. Harkins, Timothy T. Levy, Samuel Sistermans, Erik A. |
author_sort | Holstege, Henne |
collection | PubMed |
description | The somatic mutation burden in healthy white blood cells (WBCs) is not well known. Based on deep whole-genome sequencing, we estimate that approximately 450 somatic mutations accumulated in the nonrepetitive genome within the healthy blood compartment of a 115-yr-old woman. The detected mutations appear to have been harmless passenger mutations: They were enriched in noncoding, AT-rich regions that are not evolutionarily conserved, and they were depleted for genomic elements where mutations might have favorable or adverse effects on cellular fitness, such as regions with actively transcribed genes. The distribution of variant allele frequencies of these mutations suggests that the majority of the peripheral white blood cells were offspring of two related hematopoietic stem cell (HSC) clones. Moreover, telomere lengths of the WBCs were significantly shorter than telomere lengths from other tissues. Together, this suggests that the finite lifespan of HSCs, rather than somatic mutation effects, may lead to hematopoietic clonal evolution at extreme ages. |
format | Online Article Text |
id | pubmed-4009603 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Cold Spring Harbor Laboratory Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-40096032014-05-06 Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis Holstege, Henne Pfeiffer, Wayne Sie, Daoud Hulsman, Marc Nicholas, Thomas J. Lee, Clarence C. Ross, Tristen Lin, Jue Miller, Mark A. Ylstra, Bauke Meijers-Heijboer, Hanne Brugman, Martijn H. Staal, Frank J.T. Holstege, Gert Reinders, Marcel J.T. Harkins, Timothy T. Levy, Samuel Sistermans, Erik A. Genome Res Research The somatic mutation burden in healthy white blood cells (WBCs) is not well known. Based on deep whole-genome sequencing, we estimate that approximately 450 somatic mutations accumulated in the nonrepetitive genome within the healthy blood compartment of a 115-yr-old woman. The detected mutations appear to have been harmless passenger mutations: They were enriched in noncoding, AT-rich regions that are not evolutionarily conserved, and they were depleted for genomic elements where mutations might have favorable or adverse effects on cellular fitness, such as regions with actively transcribed genes. The distribution of variant allele frequencies of these mutations suggests that the majority of the peripheral white blood cells were offspring of two related hematopoietic stem cell (HSC) clones. Moreover, telomere lengths of the WBCs were significantly shorter than telomere lengths from other tissues. Together, this suggests that the finite lifespan of HSCs, rather than somatic mutation effects, may lead to hematopoietic clonal evolution at extreme ages. Cold Spring Harbor Laboratory Press 2014-05 /pmc/articles/PMC4009603/ /pubmed/24760347 http://dx.doi.org/10.1101/gr.162131.113 Text en © 2014 Holstege et al.; Published by Cold Spring Harbor Laboratory Press http://creativecommons.org/licenses/by-nc/4.0/ This article, published in Genome Research, is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/. |
spellingShingle | Research Holstege, Henne Pfeiffer, Wayne Sie, Daoud Hulsman, Marc Nicholas, Thomas J. Lee, Clarence C. Ross, Tristen Lin, Jue Miller, Mark A. Ylstra, Bauke Meijers-Heijboer, Hanne Brugman, Martijn H. Staal, Frank J.T. Holstege, Gert Reinders, Marcel J.T. Harkins, Timothy T. Levy, Samuel Sistermans, Erik A. Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis |
title | Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis |
title_full | Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis |
title_fullStr | Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis |
title_full_unstemmed | Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis |
title_short | Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis |
title_sort | somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009603/ https://www.ncbi.nlm.nih.gov/pubmed/24760347 http://dx.doi.org/10.1101/gr.162131.113 |
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