Cargando…

Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP

Single nucleotide polymorphisms (SNPs) are becoming the dominant form of molecular marker for genetic and genomic analysis. The advances in second generation DNA sequencing provide opportunities to identify very large numbers of SNPs in a range of species. However, SNP identification remains a chall...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lorenc, Michał T., Hayashi, Satomi, Stiller, Jiri, Lee, Hong, Manoli, Sahana, Ruperao, Pradeep, Visendi, Paul, Berkman, Paul J., Lai, Kaitao, Batley, Jacqueline, Edwards, David
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2012
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009776/ https://www.ncbi.nlm.nih.gov/pubmed/24832230 http://dx.doi.org/10.3390/biology1020370

Ejemplares similares

An efficient approach to BAC based assembly of complex genomes
por: Visendi, Paul, et al.
Publicado: (2016)

Next Generation Characterisation of Cereal Genomes for Marker Discovery
por: Visendi, Paul, et al.
Publicado: (2013)

Targeted identification of genomic regions using TAGdb
por: Marshall, Daniel J, et al.
Publicado: (2010)

Genome Analysis Identified Novel Candidate Genes for Ascochyta Blight Resistance in Chickpea Using Whole Genome Re-sequencing Data
por: Li, Yongle, et al.
Publicado: (2017)

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes
por: Staňková, Helena, et al.
Publicado: (2016)

CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea
por: Doddamani, Dadakhalandar, et al.
Publicado: (2015)

Scanning the Effects of Ethyl Methanesulfonate on the Whole Genome of Lotus japonicus Using Second-Generation Sequencing Analysis
por: Mohd-Yusoff, Nur Fatihah, et al.
Publicado: (2015)

SNPServer: a real-time SNP discovery tool
por: Savage, David, et al.
Publicado: (2005)

An Integrated SNP Mining and Utilization (ISMU) Pipeline for Next Generation Sequencing Data
por: Azam, Sarwar, et al.
Publicado: (2014)

Investigating Drought Tolerance in Chickpea Using Genome-Wide Association Mapping and Genomic Selection Based on Whole-Genome Resequencing Data
por: Li, Yongle, et al.
Publicado: (2018)

Chromatin immunoprecipitation (ChIP) method for non-model fruit flies (Diptera: Tephritidae) and evidence of histone modifications
por: Nagalingam, Kumaran, et al.
Publicado: (2018)

Trait associations in the pangenome of pigeon pea (Cajanus cajan)
por: Zhao, Junliang, et al.
Publicado: (2020)

Single nucleotide polymorphisms in the ANGPTL4 gene and the SNP-SNP interactions on the risk of atherosclerotic Ischaemic stroke
por: Shen, Chaoxiong, et al.
Publicado: (2021)

Single Nucleotide Polymorphism (SNP) in the Adiponectin Gene and Cardiovascular Disease
por: Chirumbolo, Salvatore
Publicado: (2016)

The Single-Nucleotide Polymorphism (SNP) Validity to Detect Omicron Variants
por: Partakusuma, Lia Gardenia, et al.
Publicado: (2023)

AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants
por: Duran, Chris, et al.
Publicado: (2009)

Reliabilities of Genomic Prediction for Young Stock Survival Traits Using 54K SNP Chip Augmented With Additional Single-Nucleotide Polymorphisms Selected From Imputed Whole-Genome Sequencing Data
por: Gebreyesus, Grum, et al.
Publicado: (2021)

SNP-PHAGE – High throughput SNP discovery pipeline
por: Matukumalli, Lakshmi K, et al.
Publicado: (2006)

Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates
por: Smits, Bart MG, et al.
Publicado: (2005)

SNP@Ethnos: a database of ethnically variant single-nucleotide polymorphisms
por: Park, Jungsun, et al.
Publicado: (2007)

Classification tree for detection of single-nucleotide polymorphism (SNP)-by-SNP interactions related to heart disease: Framingham Heart Study
por: Yao, Li, et al.
Publicado: (2009)

Single Nucleotide Polymorphisms (SNP) and SNP-SNP Interactions of the Surfactant Protein Genes Are Associated With Idiopathic Pulmonary Fibrosis in a Mexican Study Group; Comparison With Hypersensitivity Pneumonitis
por: Abbasi, Ata, et al.
Publicado: (2022)

Mouse SNP Miner: an annotated database of mouse functional single nucleotide polymorphisms
por: Reuveni, Eli, et al.
Publicado: (2007)

Single Nucleotide Polymorphism (SNP)-Strings: An Alternative Method for Assessing Genetic Associations
por: Goodin, Douglas S., et al.
Publicado: (2014)

In silico analysis of single nucleotide polymorphism (SNP) in human TNF-α gene
por: Dabhi, Brijesh, et al.
Publicado: (2014)

Fluorinated Nucleotide Modifications Modulate Allele Selectivity of SNP-Targeting Antisense Oligonucleotides
por: Østergaard, Michael E., et al.
Publicado: (2017)

Competitive SNP-LAMP probes for rapid and robust single-nucleotide polymorphism detection
por: Hyman, Leland B., et al.
Publicado: (2022)

Genome-Wide Delineation of Natural Variation for Pod Shatter Resistance in Brassica napus
por: Raman, Harsh, et al.
Publicado: (2014)

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms
por: You, Frank M, et al.
Publicado: (2012)

SNP Discovery Using a Pangenome: Has the Single Reference Approach Become Obsolete?
por: Hurgobin, Bhavna, et al.
Publicado: (2017)

Nanoparticle-based detection and quantification of DNA with single nucleotide polymorphism (SNP) discrimination selectivity
por: Qin, Wei Jie, et al.
Publicado: (2007)

Fido-SNP: the first webserver for scoring the impact of single nucleotide variants in the dog genome
por: Capriotti, Emidio, et al.
Publicado: (2019)

Genetic Analysis of Potato Breeding Collection Using Single-Nucleotide Polymorphism (SNP) Markers
por: Xiao, Xi-ou, et al.
Publicado: (2023)

dbAQP-SNP: a database of missense single-nucleotide polymorphisms in human aquaporins
por: Dande, Rachana, et al.
Publicado: (2023)

The defence‐associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias
por: Powell, Jonathan J., et al.
Publicado: (2016)

Application of machine learning in SNP discovery
por: Matukumalli, Lakshmi K, et al.
Publicado: (2006)

Translational Medicine and Reliability of Single-Nucleotide Polymorphism Studies: Can We Believe in SNP Reports or Not?
por: Valachis, Antonis, et al.
Publicado: (2011)

Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals
por: Baral, Aradhita, et al.
Publicado: (2012)

Estimation of effective population size using single-nucleotide polymorphism (SNP) data in Jeju horse
por: Do, Kyoung-Tag, et al.
Publicado: (2014)

Single Nucleotide Polymorphism (SNP) markers associated with high folate content in wild potato species
por: Bali, Sapinder, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_koval96h8itlqouv899la2mkln