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Multi-Modal Glioblastoma Segmentation: Man versus Machine
BACKGROUND AND PURPOSE: Reproducible segmentation of brain tumors on magnetic resonance images is an important clinical need. This study was designed to evaluate the reliability of a novel fully automated segmentation tool for brain tumor image analysis in comparison to manually defined tumor segmen...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4013039/ https://www.ncbi.nlm.nih.gov/pubmed/24804720 http://dx.doi.org/10.1371/journal.pone.0096873 |
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author | Porz, Nicole Bauer, Stefan Pica, Alessia Schucht, Philippe Beck, Jürgen Verma, Rajeev Kumar Slotboom, Johannes Reyes, Mauricio Wiest, Roland |
author_facet | Porz, Nicole Bauer, Stefan Pica, Alessia Schucht, Philippe Beck, Jürgen Verma, Rajeev Kumar Slotboom, Johannes Reyes, Mauricio Wiest, Roland |
author_sort | Porz, Nicole |
collection | PubMed |
description | BACKGROUND AND PURPOSE: Reproducible segmentation of brain tumors on magnetic resonance images is an important clinical need. This study was designed to evaluate the reliability of a novel fully automated segmentation tool for brain tumor image analysis in comparison to manually defined tumor segmentations. METHODS: We prospectively evaluated preoperative MR Images from 25 glioblastoma patients. Two independent expert raters performed manual segmentations. Automatic segmentations were performed using the Brain Tumor Image Analysis software (BraTumIA). In order to study the different tumor compartments, the complete tumor volume TV (enhancing part plus non-enhancing part plus necrotic core of the tumor), the TV+ (TV plus edema) and the contrast enhancing tumor volume CETV were identified. We quantified the overlap between manual and automated segmentation by calculation of diameter measurements as well as the Dice coefficients, the positive predictive values, sensitivity, relative volume error and absolute volume error. RESULTS: Comparison of automated versus manual extraction of 2-dimensional diameter measurements showed no significant difference (p = 0.29). Comparison of automated versus manual segmentation of volumetric segmentations showed significant differences for TV+ and TV (p<0.05) but no significant differences for CETV (p>0.05) with regard to the Dice overlap coefficients. Spearman's rank correlation coefficients (ρ) of TV+, TV and CETV showed highly significant correlations between automatic and manual segmentations. Tumor localization did not influence the accuracy of segmentation. CONCLUSIONS: In summary, we demonstrated that BraTumIA supports radiologists and clinicians by providing accurate measures of cross-sectional diameter-based tumor extensions. The automated volume measurements were comparable to manual tumor delineation for CETV tumor volumes, and outperformed inter-rater variability for overlap and sensitivity. |
format | Online Article Text |
id | pubmed-4013039 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-40130392014-05-09 Multi-Modal Glioblastoma Segmentation: Man versus Machine Porz, Nicole Bauer, Stefan Pica, Alessia Schucht, Philippe Beck, Jürgen Verma, Rajeev Kumar Slotboom, Johannes Reyes, Mauricio Wiest, Roland PLoS One Research Article BACKGROUND AND PURPOSE: Reproducible segmentation of brain tumors on magnetic resonance images is an important clinical need. This study was designed to evaluate the reliability of a novel fully automated segmentation tool for brain tumor image analysis in comparison to manually defined tumor segmentations. METHODS: We prospectively evaluated preoperative MR Images from 25 glioblastoma patients. Two independent expert raters performed manual segmentations. Automatic segmentations were performed using the Brain Tumor Image Analysis software (BraTumIA). In order to study the different tumor compartments, the complete tumor volume TV (enhancing part plus non-enhancing part plus necrotic core of the tumor), the TV+ (TV plus edema) and the contrast enhancing tumor volume CETV were identified. We quantified the overlap between manual and automated segmentation by calculation of diameter measurements as well as the Dice coefficients, the positive predictive values, sensitivity, relative volume error and absolute volume error. RESULTS: Comparison of automated versus manual extraction of 2-dimensional diameter measurements showed no significant difference (p = 0.29). Comparison of automated versus manual segmentation of volumetric segmentations showed significant differences for TV+ and TV (p<0.05) but no significant differences for CETV (p>0.05) with regard to the Dice overlap coefficients. Spearman's rank correlation coefficients (ρ) of TV+, TV and CETV showed highly significant correlations between automatic and manual segmentations. Tumor localization did not influence the accuracy of segmentation. CONCLUSIONS: In summary, we demonstrated that BraTumIA supports radiologists and clinicians by providing accurate measures of cross-sectional diameter-based tumor extensions. The automated volume measurements were comparable to manual tumor delineation for CETV tumor volumes, and outperformed inter-rater variability for overlap and sensitivity. Public Library of Science 2014-05-07 /pmc/articles/PMC4013039/ /pubmed/24804720 http://dx.doi.org/10.1371/journal.pone.0096873 Text en © 2014 Porz et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Porz, Nicole Bauer, Stefan Pica, Alessia Schucht, Philippe Beck, Jürgen Verma, Rajeev Kumar Slotboom, Johannes Reyes, Mauricio Wiest, Roland Multi-Modal Glioblastoma Segmentation: Man versus Machine |
title | Multi-Modal Glioblastoma Segmentation: Man versus Machine |
title_full | Multi-Modal Glioblastoma Segmentation: Man versus Machine |
title_fullStr | Multi-Modal Glioblastoma Segmentation: Man versus Machine |
title_full_unstemmed | Multi-Modal Glioblastoma Segmentation: Man versus Machine |
title_short | Multi-Modal Glioblastoma Segmentation: Man versus Machine |
title_sort | multi-modal glioblastoma segmentation: man versus machine |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4013039/ https://www.ncbi.nlm.nih.gov/pubmed/24804720 http://dx.doi.org/10.1371/journal.pone.0096873 |
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