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Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement

One of the great challenges in refining macromolecular crystal structures is a low data-to-parameter ratio. Historically, knowledge from chemistry has been used to help to improve this ratio. When a macromolecule crystallizes with more than one copy in the asymmetric unit, the noncrystallographic sy...

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Autores principales: Headd, Jeffrey J., Echols, Nathaniel, Afonine, Pavel V., Moriarty, Nigel W., Gildea, Richard J., Adams, Paul D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4014122/
https://www.ncbi.nlm.nih.gov/pubmed/24816103
http://dx.doi.org/10.1107/S1399004714003277
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author Headd, Jeffrey J.
Echols, Nathaniel
Afonine, Pavel V.
Moriarty, Nigel W.
Gildea, Richard J.
Adams, Paul D.
author_facet Headd, Jeffrey J.
Echols, Nathaniel
Afonine, Pavel V.
Moriarty, Nigel W.
Gildea, Richard J.
Adams, Paul D.
author_sort Headd, Jeffrey J.
collection PubMed
description One of the great challenges in refining macromolecular crystal structures is a low data-to-parameter ratio. Historically, knowledge from chemistry has been used to help to improve this ratio. When a macromolecule crystallizes with more than one copy in the asymmetric unit, the noncrystallographic symmetry relationships can be exploited to provide additional restraints when refining the working model. However, although globally similar, NCS-related chains often have local differences. To allow for local differences between NCS-related molecules, flexible torsion-based NCS restraints have been introduced, coupled with intelligent rotamer handling for protein chains, and are available in phenix.refine for refinement of models at all resolutions.
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spelling pubmed-40141222014-06-05 Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement Headd, Jeffrey J. Echols, Nathaniel Afonine, Pavel V. Moriarty, Nigel W. Gildea, Richard J. Adams, Paul D. Acta Crystallogr D Biol Crystallogr Research Papers One of the great challenges in refining macromolecular crystal structures is a low data-to-parameter ratio. Historically, knowledge from chemistry has been used to help to improve this ratio. When a macromolecule crystallizes with more than one copy in the asymmetric unit, the noncrystallographic symmetry relationships can be exploited to provide additional restraints when refining the working model. However, although globally similar, NCS-related chains often have local differences. To allow for local differences between NCS-related molecules, flexible torsion-based NCS restraints have been introduced, coupled with intelligent rotamer handling for protein chains, and are available in phenix.refine for refinement of models at all resolutions. International Union of Crystallography 2014-04-30 /pmc/articles/PMC4014122/ /pubmed/24816103 http://dx.doi.org/10.1107/S1399004714003277 Text en © Headd et al. 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Headd, Jeffrey J.
Echols, Nathaniel
Afonine, Pavel V.
Moriarty, Nigel W.
Gildea, Richard J.
Adams, Paul D.
Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
title Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
title_full Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
title_fullStr Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
title_full_unstemmed Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
title_short Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
title_sort flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4014122/
https://www.ncbi.nlm.nih.gov/pubmed/24816103
http://dx.doi.org/10.1107/S1399004714003277
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