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Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
One of the great challenges in refining macromolecular crystal structures is a low data-to-parameter ratio. Historically, knowledge from chemistry has been used to help to improve this ratio. When a macromolecule crystallizes with more than one copy in the asymmetric unit, the noncrystallographic sy...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4014122/ https://www.ncbi.nlm.nih.gov/pubmed/24816103 http://dx.doi.org/10.1107/S1399004714003277 |
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author | Headd, Jeffrey J. Echols, Nathaniel Afonine, Pavel V. Moriarty, Nigel W. Gildea, Richard J. Adams, Paul D. |
author_facet | Headd, Jeffrey J. Echols, Nathaniel Afonine, Pavel V. Moriarty, Nigel W. Gildea, Richard J. Adams, Paul D. |
author_sort | Headd, Jeffrey J. |
collection | PubMed |
description | One of the great challenges in refining macromolecular crystal structures is a low data-to-parameter ratio. Historically, knowledge from chemistry has been used to help to improve this ratio. When a macromolecule crystallizes with more than one copy in the asymmetric unit, the noncrystallographic symmetry relationships can be exploited to provide additional restraints when refining the working model. However, although globally similar, NCS-related chains often have local differences. To allow for local differences between NCS-related molecules, flexible torsion-based NCS restraints have been introduced, coupled with intelligent rotamer handling for protein chains, and are available in phenix.refine for refinement of models at all resolutions. |
format | Online Article Text |
id | pubmed-4014122 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-40141222014-06-05 Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement Headd, Jeffrey J. Echols, Nathaniel Afonine, Pavel V. Moriarty, Nigel W. Gildea, Richard J. Adams, Paul D. Acta Crystallogr D Biol Crystallogr Research Papers One of the great challenges in refining macromolecular crystal structures is a low data-to-parameter ratio. Historically, knowledge from chemistry has been used to help to improve this ratio. When a macromolecule crystallizes with more than one copy in the asymmetric unit, the noncrystallographic symmetry relationships can be exploited to provide additional restraints when refining the working model. However, although globally similar, NCS-related chains often have local differences. To allow for local differences between NCS-related molecules, flexible torsion-based NCS restraints have been introduced, coupled with intelligent rotamer handling for protein chains, and are available in phenix.refine for refinement of models at all resolutions. International Union of Crystallography 2014-04-30 /pmc/articles/PMC4014122/ /pubmed/24816103 http://dx.doi.org/10.1107/S1399004714003277 Text en © Headd et al. 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Headd, Jeffrey J. Echols, Nathaniel Afonine, Pavel V. Moriarty, Nigel W. Gildea, Richard J. Adams, Paul D. Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement |
title | Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement |
title_full | Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement |
title_fullStr | Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement |
title_full_unstemmed | Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement |
title_short | Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement |
title_sort | flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4014122/ https://www.ncbi.nlm.nih.gov/pubmed/24816103 http://dx.doi.org/10.1107/S1399004714003277 |
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