Cargando…

Temporal dynamics and transcriptional control using single-cell gene expression analysis

BACKGROUND: Changes in environmental conditions lead to expression variation that manifest at the level of gene regulatory networks. Despite a strong understanding of the role noise plays in synthetic biological systems, it remains unclear how propagation of expression heterogeneity in an endogenous...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kouno, Tsukasa, de Hoon, Michiel, Mar, Jessica C, Tomaru, Yasuhiro, Kawano, Mitsuoki, Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Shin, Jay W
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015031/ https://www.ncbi.nlm.nih.gov/pubmed/24156252 http://dx.doi.org/10.1186/gb-2013-14-10-r118

Ejemplares similares

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE
por: Vitezic, Morana, et al.
Publicado: (2010)

Beyond the FANTOM4
por: Suzuki, Harukazu, et al.
Publicado: (2010)

A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiation
por: Tomaru, Yasuhiro, et al.
Publicado: (2014)

The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
por: Kawaji, Hideya, et al.
Publicado: (2009)

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
por: Kawaji, Hideya, et al.
Publicado: (2011)

Identification of DNA regions and a set of transcriptional regulatory factors involved in transcriptional regulation of several human liver-enriched transcription factor genes
por: Miura, Hisashi, et al.
Publicado: (2009)

Identification of transcriptional regulatory cascades in retinoic acid-induced growth arrest of HepG2 cells
por: Nakanishi, Misato, et al.
Publicado: (2008)

Nuclear Pore Complex Protein Mediated Nuclear Localization of Dicer Protein in Human Cells
por: Ando, Yoshinari, et al.
Publicado: (2011)

Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation
por: Kubosaki, Atsutaka, et al.
Publicado: (2009)

Genome Network and FANTOM3: Assessing the Complexity of the Transcriptome
por: Hayashizaki, Yoshihide, et al.
Publicado: (2006)

Establishment of single-cell screening system for the rapid identification of transcriptional modulators involved in direct cell reprogramming
por: Shin, Jay W., et al.
Publicado: (2012)

Reconstruction of Monocyte Transcriptional Regulatory Network Accompanies Monocytic Functions in Human Fibroblasts
por: Suzuki, Takahiro, et al.
Publicado: (2012)

Human genome research enters a new phase
por: Suzuki, Harukazu, et al.
Publicado: (2005)

Dynamic usage of transcription start sites within core promoters
por: Kawaji, Hideya, et al.
Publicado: (2006)

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions
por: Severin, Jessica, et al.
Publicado: (2009)

A novel replication-independent histone H2a gene in mouse
por: Nishida, Hiromi, et al.
Publicado: (2005)

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation
por: Harbers, Matthias, et al.
Publicado: (2013)

Clusters of Internally Primed Transcripts Reveal Novel Long Noncoding RNAs
por: Furuno, Masaaki, et al.
Publicado: (2006)

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics
por: Roy, Sugata, et al.
Publicado: (2015)

Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis
por: Tomaru, Yasuhiro, et al.
Publicado: (2009)

CAGE-TSSchip: promoter-based expression profiling using the 5'-leading label of capped transcripts
por: Katayama, Shintaro, et al.
Publicado: (2007)

pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5′/3′ arm variation including concomitant cleavage and polyuridylation patterns
por: Burroughs, A. Maxwell, et al.
Publicado: (2012)

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line
por: Lizio, Marina, et al.
Publicado: (2015)

Identification of an inter-transcription factor regulatory network in human hepatoma cells by Matrix RNAi
por: Tomaru, Yasuhiro, et al.
Publicado: (2009)

Comparative analysis of expression of histone H2a genes in mouse
por: Nishida, Hiromi, et al.
Publicado: (2005)

SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells
por: Moody, Jonathan, et al.
Publicado: (2022)

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters
por: Ponjavic, Jasmina, et al.
Publicado: (2006)

Naturally occurring antisense RNA of histone H2a in mouse cultured cell lines
por: Nishida, Hiromi, et al.
Publicado: (2005)

MicroRNA-27a/b-3p and PPARG regulate SCAMP3 through a feed-forward loop during adipogenesis
por: Kulyté, Agné, et al.
Publicado: (2019)

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns
por: Kratz, Anton, et al.
Publicado: (2010)

Antisense transcripts with rice full-length cDNAs
por: Osato, Naoki, et al.
Publicado: (2004)

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
por: Kawaji, Hideya, et al.
Publicado: (2014)

Telomerase Reverse Transcriptase Regulates microRNAs
por: Lassmann, Timo, et al.
Publicado: (2015)

Simplified ontologies allowing comparison of developmental mammalian gene expression
por: Kruger, Adele, et al.
Publicado: (2007)

MOIRAI: a compact workflow system for CAGE analysis
por: Hasegawa, Akira, et al.
Publicado: (2014)

The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types
por: Kawaji, Hideya, et al.
Publicado: (2017)

Promoter Usage and Dynamics in Vascular Smooth Muscle Cells Exposed to Fibroblast Growth Factor-2 or Interleukin-1β
por: Alhendi, Ahmad M. N., et al.
Publicado: (2018)

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution
por: Kouno, Tsukasa, et al.
Publicado: (2019)

Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians
por: Hashimoto, Kosuke, et al.
Publicado: (2019)

Data-driven normalization strategies for high-throughput quantitative RT-PCR
por: Mar, Jessica C, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_fvhiollhhqj9if1bh9um7econe