Cargando…

Parallel deep transcriptome and proteome analysis of zebrafish larvae

BACKGROUND: Sensitivity and throughput of transcriptomic and proteomic technologies have advanced tremendously in recent years. With the use of deep sequencing of RNA samples (RNA-seq) and mass spectrometry technology for protein identification and quantitation, it is now feasible to compare gene an...

Descripción completa

Detalles Bibliográficos
Autores principales:	Palmblad, Magnus, Henkel, Christiaan V, Dirks, Ron P, Meijer, Annemarie H, Deelder, André M, Spaink, Herman P
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2013
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016144/ https://www.ncbi.nlm.nih.gov/pubmed/24156766 http://dx.doi.org/10.1186/1756-0500-6-428

Ejemplares similares

Host-Pathogen Interactions Made Transparent with the Zebrafish Model
por: Meijer, Annemarie H, et al.
Publicado: (2011)

Pathogen Recognition and Activation of the Innate Immune Response in Zebrafish
por: van der Vaart, Michiel, et al.
Publicado: (2012)

MicroRNA-146 function in the innate immune transcriptome response of zebrafish embryos to Salmonella typhimurium infection
por: Ordas, Anita, et al.
Publicado: (2013)

RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection
por: Rougeot, Julien, et al.
Publicado: (2019)

Corrigendum: RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection
por: Rougeot, Julien, et al.
Publicado: (2019)

Macrophage-pathogen interactions in infectious diseases: new therapeutic insights from the zebrafish host model
por: Torraca, Vincenzo, et al.
Publicado: (2014)

Common and specific downstream signaling targets controlled by Tlr2 and Tlr5 innate immune signaling in zebrafish
por: Yang, Shuxin, et al.
Publicado: (2015)

Transcriptomic and Metabolomic Studies Reveal That Toll-like Receptor 2 Has a Role in Glucose-Related Metabolism in Unchallenged Zebrafish Larvae (Danio rerio)
por: Hu, Wanbin, et al.
Publicado: (2023)

Loss of Shp1 impairs myeloid cell function and causes lethal inflammation in zebrafish larvae
por: Allers, Maaike, et al.
Publicado: (2023)

Impact of post-hatching maturation on the pharmacokinetics of paracetamol in zebrafish larvae
por: van Wijk, Rob C., et al.
Publicado: (2019)

Rapid screening of innate immune gene expression in zebrafish using reverse transcription - multiplex ligation-dependent probe amplification
por: Rotman, Janneke, et al.
Publicado: (2011)

A full-body transcriptome and proteome resource for the European common carp
por: Kolder, I. C. R. M., et al.
Publicado: (2016)

Infection and RNA-seq analysis of a zebrafish tlr2 mutant shows a broad function of this toll-like receptor in transcriptional and metabolic control and defense to Mycobacterium marinum infection
por: Hu, Wanbin, et al.
Publicado: (2019)

Functional analysis of a zebrafish myd88 mutant identifies key transcriptional components of the innate immune system
por: van der Vaart, Michiel, et al.
Publicado: (2013)

Correlative light and electron microscopy imaging of autophagy in a zebrafish infection model
por: Hosseini, Rohola, et al.
Publicado: (2014)

Protein expression dynamics during Escherichia Coli glucose-lactose diauxie
por: Mostovenko, Ekaterina, et al.
Publicado: (2011)

Infection of Zebrafish Embryos with Intracellular Bacterial Pathogens
por: Benard, Erica L., et al.
Publicado: (2012)

Deep learning image recognition enables efficient genome editing in zebrafish by automated injections
por: Cordero-Maldonado, Maria Lorena, et al.
Publicado: (2019)

Deep RNA Sequencing of the Skeletal Muscle Transcriptome in Swimming Fish
por: Palstra, Arjan P., et al.
Publicado: (2013)

Advances in genomics of bony fish
por: Spaink, Herman P., et al.
Publicado: (2014)

Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism
por: Leijten, Niels M., et al.
Publicado: (2021)

Comparison of static immersion and intravenous injection systems for exposure of zebrafish embryos to the natural pathogen Edwardsiella tarda
por: van Soest, Joost J, et al.
Publicado: (2011)

RNA isolation method for single embryo transcriptome analysis in zebrafish
por: de Jong, Mark, et al.
Publicado: (2010)

A zebrafish high throughput screening system used for Staphylococcus epidermidis infection marker discovery
por: Veneman, Wouter J, et al.
Publicado: (2013)

Deep mRNA Sequencing Analysis to Capture the Transcriptome Landscape of Zebrafish Embryos and Larvae
por: Yang, Hongxing, et al.
Publicado: (2013)

Theoretical Considerations for Next-Generation Proteomics
por: Palmblad, Magnus
Publicado: (2021)

Transcriptome analysis of the response to chronic constant hypoxia in zebrafish hearts
por: Marques, Ines J., et al.
Publicado: (2007)

Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example
por: Rauwerda, Han, et al.
Publicado: (2010)

A Novel Function of TLR2 and MyD88 in the Regulation of Leukocyte Cell Migration Behavior During Wounding in Zebrafish Larvae
por: Hu, Wanbin, et al.
Publicado: (2021)

Zebrafish larvae as experimental model to expedite the search for new biomarkers and treatments for neonatal sepsis
por: Keij, Fleur M., et al.
Publicado: (2021)

COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies
por: Travin, Dmitrii, et al.
Publicado: (2017)

Mycobacteria Counteract a TLR-Mediated Nitrosative Defense Mechanism in a Zebrafish Infection Model
por: Elks, Philip M., et al.
Publicado: (2014)

Analysis of RNAseq datasets from a comparative infectious disease zebrafish model using GeneTiles bioinformatics
por: Veneman, Wouter J., et al.
Publicado: (2014)

De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing
por: Liem, Michael, et al.
Publicado: (2018)

A High-Throughput Screen for Tuberculosis Progression
por: Carvalho, Ralph, et al.
Publicado: (2011)

In vivo Host-Pathogen Interaction as Revealed by Global Proteomic Profiling of Zebrafish Larvae
por: Díaz-Pascual, Francisco, et al.
Publicado: (2017)

Pharmacokinetic Modeling of Paracetamol Uptake and Clearance in Zebrafish Larvae: Expanding the Allometric Scale in Vertebrates with Five Orders of Magnitude
por: Kantae, Vasudev, et al.
Publicado: (2016)

“Lossless” compression of high resolution mass spectra of small molecules
por: Blanckenburg, Bo, et al.
Publicado: (2010)

Neutrophil-mediated experimental metastasis is enhanced by VEGFR inhibition in a zebrafish xenograft model
por: He, Shuning, et al.
Publicado: (2012)

The adapter protein Myd88 plays an important role in limiting mycobacterial growth in a zebrafish model for tuberculosis
por: Hosseini, Rohola, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_f1vp4b32lv5bklbkt0sj3m5fo9