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Multi-Task Linear Programming Discriminant Analysis for the Identification of Progressive MCI Individuals

Accurately identifying mild cognitive impairment (MCI) individuals who will progress to Alzheimer's disease (AD) is very important for making early interventions. Many classification methods focus on integrating multiple imaging modalities such as magnetic resonance imaging (MRI) and fluorodeox...

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Detalles Bibliográficos
Autores principales: Yu, Guan, Liu, Yufeng, Thung, Kim-Han, Shen, Dinggang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4018387/
https://www.ncbi.nlm.nih.gov/pubmed/24820966
http://dx.doi.org/10.1371/journal.pone.0096458
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author Yu, Guan
Liu, Yufeng
Thung, Kim-Han
Shen, Dinggang
author_facet Yu, Guan
Liu, Yufeng
Thung, Kim-Han
Shen, Dinggang
author_sort Yu, Guan
collection PubMed
description Accurately identifying mild cognitive impairment (MCI) individuals who will progress to Alzheimer's disease (AD) is very important for making early interventions. Many classification methods focus on integrating multiple imaging modalities such as magnetic resonance imaging (MRI) and fluorodeoxyglucose positron emission tomography (FDG-PET). However, the main challenge for MCI classification using multiple imaging modalities is the existence of a lot of missing data in many subjects. For example, in the Alzheimer's Disease Neuroimaging Initiative (ADNI) study, almost half of the subjects do not have PET images. In this paper, we propose a new and flexible binary classification method, namely Multi-task Linear Programming Discriminant (MLPD) analysis, for the incomplete multi-source feature learning. Specifically, we decompose the classification problem into different classification tasks, i.e., one for each combination of available data sources. To solve all different classification tasks jointly, our proposed MLPD method links them together by constraining them to achieve the similar estimated mean difference between the two classes (under classification) for those shared features. Compared with the state-of-the-art incomplete Multi-Source Feature (iMSF) learning method, instead of constraining different classification tasks to choose a common feature subset for those shared features, MLPD can flexibly and adaptively choose different feature subsets for different classification tasks. Furthermore, our proposed MLPD method can be efficiently implemented by linear programming. To validate our MLPD method, we perform experiments on the ADNI baseline dataset with the incomplete MRI and PET images from 167 progressive MCI (pMCI) subjects and 226 stable MCI (sMCI) subjects. We further compared our method with the iMSF method (using incomplete MRI and PET images) and also the single-task classification method (using only MRI or only subjects with both MRI and PET images). Experimental results show very promising performance of our proposed MLPD method.
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spelling pubmed-40183872014-05-16 Multi-Task Linear Programming Discriminant Analysis for the Identification of Progressive MCI Individuals Yu, Guan Liu, Yufeng Thung, Kim-Han Shen, Dinggang PLoS One Research Article Accurately identifying mild cognitive impairment (MCI) individuals who will progress to Alzheimer's disease (AD) is very important for making early interventions. Many classification methods focus on integrating multiple imaging modalities such as magnetic resonance imaging (MRI) and fluorodeoxyglucose positron emission tomography (FDG-PET). However, the main challenge for MCI classification using multiple imaging modalities is the existence of a lot of missing data in many subjects. For example, in the Alzheimer's Disease Neuroimaging Initiative (ADNI) study, almost half of the subjects do not have PET images. In this paper, we propose a new and flexible binary classification method, namely Multi-task Linear Programming Discriminant (MLPD) analysis, for the incomplete multi-source feature learning. Specifically, we decompose the classification problem into different classification tasks, i.e., one for each combination of available data sources. To solve all different classification tasks jointly, our proposed MLPD method links them together by constraining them to achieve the similar estimated mean difference between the two classes (under classification) for those shared features. Compared with the state-of-the-art incomplete Multi-Source Feature (iMSF) learning method, instead of constraining different classification tasks to choose a common feature subset for those shared features, MLPD can flexibly and adaptively choose different feature subsets for different classification tasks. Furthermore, our proposed MLPD method can be efficiently implemented by linear programming. To validate our MLPD method, we perform experiments on the ADNI baseline dataset with the incomplete MRI and PET images from 167 progressive MCI (pMCI) subjects and 226 stable MCI (sMCI) subjects. We further compared our method with the iMSF method (using incomplete MRI and PET images) and also the single-task classification method (using only MRI or only subjects with both MRI and PET images). Experimental results show very promising performance of our proposed MLPD method. Public Library of Science 2014-05-12 /pmc/articles/PMC4018387/ /pubmed/24820966 http://dx.doi.org/10.1371/journal.pone.0096458 Text en © 2014 Yu et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Yu, Guan
Liu, Yufeng
Thung, Kim-Han
Shen, Dinggang
Multi-Task Linear Programming Discriminant Analysis for the Identification of Progressive MCI Individuals
title Multi-Task Linear Programming Discriminant Analysis for the Identification of Progressive MCI Individuals
title_full Multi-Task Linear Programming Discriminant Analysis for the Identification of Progressive MCI Individuals
title_fullStr Multi-Task Linear Programming Discriminant Analysis for the Identification of Progressive MCI Individuals
title_full_unstemmed Multi-Task Linear Programming Discriminant Analysis for the Identification of Progressive MCI Individuals
title_short Multi-Task Linear Programming Discriminant Analysis for the Identification of Progressive MCI Individuals
title_sort multi-task linear programming discriminant analysis for the identification of progressive mci individuals
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4018387/
https://www.ncbi.nlm.nih.gov/pubmed/24820966
http://dx.doi.org/10.1371/journal.pone.0096458
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