RNAbrowse: RNA-Seq De Novo Assembly Results Browser

Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse....

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Detalles Bibliográficos
Autores principales: Mariette, Jérôme, Noirot, Céline, Nabihoudine, Ibounyamine, Bardou, Philippe, Hoede, Claire, Djari, Anis, Cabau, Cédric, Klopp, Christophe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019526/
https://www.ncbi.nlm.nih.gov/pubmed/24823498
http://dx.doi.org/10.1371/journal.pone.0096821
Descripción
Sumario:Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. This article presents a user oriented storage and visualisation environment permitting to explore the data in a top-down manner, going from general graphical views to all possible details. The software package is based on biomart, easy to install and populate with local data. The software package is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/RNAbrowse.

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