RNAbrowse: RNA-Seq De Novo Assembly Results Browser

Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse....

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Detalles Bibliográficos
Autores principales: Mariette, Jérôme, Noirot, Céline, Nabihoudine, Ibounyamine, Bardou, Philippe, Hoede, Claire, Djari, Anis, Cabau, Cédric, Klopp, Christophe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019526/
https://www.ncbi.nlm.nih.gov/pubmed/24823498
http://dx.doi.org/10.1371/journal.pone.0096821
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author Mariette, Jérôme
Noirot, Céline
Nabihoudine, Ibounyamine
Bardou, Philippe
Hoede, Claire
Djari, Anis
Cabau, Cédric
Klopp, Christophe
author_facet Mariette, Jérôme
Noirot, Céline
Nabihoudine, Ibounyamine
Bardou, Philippe
Hoede, Claire
Djari, Anis
Cabau, Cédric
Klopp, Christophe
author_sort Mariette, Jérôme
collection PubMed
description Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. This article presents a user oriented storage and visualisation environment permitting to explore the data in a top-down manner, going from general graphical views to all possible details. The software package is based on biomart, easy to install and populate with local data. The software package is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/RNAbrowse.
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spelling pubmed-40195262014-05-16 RNAbrowse: RNA-Seq De Novo Assembly Results Browser Mariette, Jérôme Noirot, Céline Nabihoudine, Ibounyamine Bardou, Philippe Hoede, Claire Djari, Anis Cabau, Cédric Klopp, Christophe PLoS One Research Article Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. This article presents a user oriented storage and visualisation environment permitting to explore the data in a top-down manner, going from general graphical views to all possible details. The software package is based on biomart, easy to install and populate with local data. The software package is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/RNAbrowse. Public Library of Science 2014-05-13 /pmc/articles/PMC4019526/ /pubmed/24823498 http://dx.doi.org/10.1371/journal.pone.0096821 Text en © 2014 Mariette et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Mariette, Jérôme
Noirot, Céline
Nabihoudine, Ibounyamine
Bardou, Philippe
Hoede, Claire
Djari, Anis
Cabau, Cédric
Klopp, Christophe
RNAbrowse: RNA-Seq De Novo Assembly Results Browser
title RNAbrowse: RNA-Seq De Novo Assembly Results Browser
title_full RNAbrowse: RNA-Seq De Novo Assembly Results Browser
title_fullStr RNAbrowse: RNA-Seq De Novo Assembly Results Browser
title_full_unstemmed RNAbrowse: RNA-Seq De Novo Assembly Results Browser
title_short RNAbrowse: RNA-Seq De Novo Assembly Results Browser
title_sort rnabrowse: rna-seq de novo assembly results browser
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019526/
https://www.ncbi.nlm.nih.gov/pubmed/24823498
http://dx.doi.org/10.1371/journal.pone.0096821
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