OTG-snpcaller: An Optimized Pipeline Based on TMAP and GATK for SNP Calling from Ion Torrent Data

Because the new Proton platform from Life Technologies produced markedly different data from those of the Illumina platform, the conventional Illumina data analysis pipeline could not be used directly. We developed an optimized SNP calling method using TMAP and GATK (OTG-snpcaller). This method comb...

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Detalles Bibliográficos
Autores principales: Zhu, Pengyuan, He, Lingyu, Li, Yaqiao, Huang, Wenpan, Xi, Feng, Lin, Lin, Zhi, Qihuan, Zhang, Wenwei, Tang, Y. Tom, Geng, Chunyu, Lu, Zhiyuan, Xu, Xun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4019570/
https://www.ncbi.nlm.nih.gov/pubmed/24824529
http://dx.doi.org/10.1371/journal.pone.0097507

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