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Finding Sequences for over 270 Orphan Enzymes

Despite advances in sequencing technology, there are still significant numbers of well-characterized enzymatic activities for which there are no known associated sequences. These ‘orphan enzymes’ represent glaring holes in our biological understanding, and it is a top priority to reunite them with t...

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Detalles Bibliográficos
Autores principales: Shearer, Alexander G., Altman, Tomer, Rhee, Christine D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4020792/
https://www.ncbi.nlm.nih.gov/pubmed/24826896
http://dx.doi.org/10.1371/journal.pone.0097250
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author Shearer, Alexander G.
Altman, Tomer
Rhee, Christine D.
author_facet Shearer, Alexander G.
Altman, Tomer
Rhee, Christine D.
author_sort Shearer, Alexander G.
collection PubMed
description Despite advances in sequencing technology, there are still significant numbers of well-characterized enzymatic activities for which there are no known associated sequences. These ‘orphan enzymes’ represent glaring holes in our biological understanding, and it is a top priority to reunite them with their coding sequences. Here we report a methodology for resolving orphan enzymes through a combination of database search and literature review. Using this method we were able to reconnect over 270 orphan enzymes with their corresponding sequence. This success points toward how we can systematically eliminate the remaining orphan enzymes and prevent the introduction of future orphan enzymes.
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spelling pubmed-40207922014-05-21 Finding Sequences for over 270 Orphan Enzymes Shearer, Alexander G. Altman, Tomer Rhee, Christine D. PLoS One Research Article Despite advances in sequencing technology, there are still significant numbers of well-characterized enzymatic activities for which there are no known associated sequences. These ‘orphan enzymes’ represent glaring holes in our biological understanding, and it is a top priority to reunite them with their coding sequences. Here we report a methodology for resolving orphan enzymes through a combination of database search and literature review. Using this method we were able to reconnect over 270 orphan enzymes with their corresponding sequence. This success points toward how we can systematically eliminate the remaining orphan enzymes and prevent the introduction of future orphan enzymes. Public Library of Science 2014-05-14 /pmc/articles/PMC4020792/ /pubmed/24826896 http://dx.doi.org/10.1371/journal.pone.0097250 Text en © 2014 Shearer et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Shearer, Alexander G.
Altman, Tomer
Rhee, Christine D.
Finding Sequences for over 270 Orphan Enzymes
title Finding Sequences for over 270 Orphan Enzymes
title_full Finding Sequences for over 270 Orphan Enzymes
title_fullStr Finding Sequences for over 270 Orphan Enzymes
title_full_unstemmed Finding Sequences for over 270 Orphan Enzymes
title_short Finding Sequences for over 270 Orphan Enzymes
title_sort finding sequences for over 270 orphan enzymes
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4020792/
https://www.ncbi.nlm.nih.gov/pubmed/24826896
http://dx.doi.org/10.1371/journal.pone.0097250
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