Cargando…

Differential meta-analysis of RNA-seq data from multiple studies

BACKGROUND: High-throughput sequencing is now regularly used for studies of the transcriptome (RNA-seq), particularly for comparisons among experimental conditions. For the time being, a limited number of biological replicates are typically considered in such experiments, leading to low detection po...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rau, Andrea, Marot, Guillemette, Jaffrézic, Florence
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4021464/ https://www.ncbi.nlm.nih.gov/pubmed/24678608 http://dx.doi.org/10.1186/1471-2105-15-91

Ejemplares similares

Joint estimation of causal effects from observational and intervention gene expression data
por: Rau, Andrea, et al.
Publicado: (2013)

On Differential Gene Expression Using RNA-Seq Data
por: Lee, Juhee, et al.
Publicado: (2011)

A unified framework for the integration of multiple hierarchical clusterings or networks from multi-source data
por: Hulot, Audrey, et al.
Publicado: (2021)

An iteration normalization and test method for differential expression analysis of RNA-seq data
por: Zhou, Yan, et al.
Publicado: (2014)

Differential expression analysis for paired RNA-seq data
por: Chung, Lisa M, et al.
Publicado: (2013)

Stability of methods for differential expression analysis of RNA-seq data
por: Lin, Bingqing, et al.
Publicado: (2019)

A Hierarchical Poisson Log-Normal Model for Network Inference from RNA Sequencing Data
por: Gallopin, Mélina, et al.
Publicado: (2013)

Power analysis for RNA-Seq differential expression studies
por: Yu, Lianbo, et al.
Publicado: (2017)

SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis
por: Blanck, Samuel, et al.
Publicado: (2019)

iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
por: Ge, Steven Xijin, et al.
Publicado: (2018)

Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data
por: Blumberg, Amit, et al.
Publicado: (2021)

IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data
por: Niu, Liang, et al.
Publicado: (2014)

Nonparametric Tests for Differential Histone Enrichment with ChIP-Seq Data
por: Wu, Qian, et al.
Publicado: (2015)

Sample size calculation based on exact test for assessing differential expression analysis in RNA-seq data
por: Li, Chung-I, et al.
Publicado: (2013)

A statistical normalization method and differential expression analysis for RNA-seq data between different species
por: Zhou, Yan, et al.
Publicado: (2019)

DTWscore: differential expression and cell clustering analysis for time-series single-cell RNA-seq data
por: Wang, Zhuo, et al.
Publicado: (2017)

Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays
por: Srinivasan, Subhashini, et al.
Publicado: (2012)

DeLTa-Seq: direct-lysate targeted RNA-Seq from crude tissue lysate
por: Kashima, Makoto, et al.
Publicado: (2022)

Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster
por: Lin, Yanzhu, et al.
Publicado: (2016)

A new pipeline for structural characterization and classification of RNA-Seq microbiome data
por: Racedo, Sebastian, et al.
Publicado: (2021)

Comparative evaluation of gene set analysis approaches for RNA-Seq data
por: Rahmatallah, Yasir, et al.
Publicado: (2014)

Estimation of data-specific constitutive exons with RNA-Seq data
por: Patrick, Ellis, et al.
Publicado: (2013)

Predicting the functional repertoire of an organism from unassembled RNA–seq data
por: Landesfeind, Manuel, et al.
Publicado: (2014)

The Model-Based Study of the Effectiveness of Reporting Lists of Small Feature Sets Using RNA-Seq Data
por: Kim, Eunji, et al.
Publicado: (2017)

Measure transcript integrity using RNA-seq data
por: Wang, Liguo, et al.
Publicado: (2016)

Data-based RNA-seq simulations by binomial thinning
por: Gerard, David
Publicado: (2020)

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
por: Fernandes, Andrew D, et al.
Publicado: (2014)

Gene set analysis controlling for length bias in RNA-seq experiments
por: Ren, Xing, et al.
Publicado: (2017)

DEGnext: classification of differentially expressed genes from RNA-seq data using a convolutional neural network with transfer learning
por: Kakati, Tulika, et al.
Publicado: (2022)

Efficient identification of multiple pathways: RNA-Seq analysis of livers from (56)Fe ion irradiated mice
por: Nia, Anna M., et al.
Publicado: (2020)

A scaling-free minimum enclosing ball method to detect differentially expressed genes for RNA-seq data
por: Zhou, Yan, et al.
Publicado: (2021)

ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation
por: Reske, Jake J., et al.
Publicado: (2020)

Power analysis for RNA-Seq differential expression studies using generalized linear mixed effects models
por: Yu, Lianbo, et al.
Publicado: (2020)

Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data
por: Gundogdu, Pelin, et al.
Publicado: (2022)

Testing for association between RNA-Seq and high-dimensional data
por: Rauschenberger, Armin, et al.
Publicado: (2016)

Identifying and exploiting gene-pathway interactions from RNA-seq data for binary phenotype
por: Shao, Fang, et al.
Publicado: (2019)

A fast detection of fusion genes from paired-end RNA-seq data
por: Vu, Trung Nghia, et al.
Publicado: (2018)

Baiting out a full length sequence from unmapped RNA-seq data
por: Li, Dongwei, et al.
Publicado: (2021)

BALLI: Bartlett-adjusted likelihood-based linear model approach for identifying differentially expressed genes with RNA-seq data
por: Park, Kyungtaek, et al.
Publicado: (2019)

Data-based filtering for replicated high-throughput transcriptome sequencing experiments
por: Rau, Andrea, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_0gua4npjui00rs2qogm5ql8mpo