Cargando…

ChIP-less analysis of chromatin states

BACKGROUND: Histone post-translational modifications (PTMs) are key epigenetic regulators in chromatin-based processes. Increasing evidence suggests that vast combinations of PTMs exist within chromatin histones. These complex patterns, rather than individual PTMs, are thought to define functional c...

Descripción completa

Detalles Bibliográficos
Autores principales:	Su, Zhangli, Boersma, Melissa D, Lee, Jin-Hee, Oliver, Samuel S, Liu, Shichong, Garcia, Benjamin A, Denu, John M
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Methodology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4022240/ https://www.ncbi.nlm.nih.gov/pubmed/24872844 http://dx.doi.org/10.1186/1756-8935-7-7

Ejemplares similares

Protocol: methodology for chromatin immunoprecipitation (ChIP) in Chlamydomonas reinhardtii
por: Strenkert, Daniela, et al.
Publicado: (2011)

Protocol: fine-tuning of a Chromatin Immunoprecipitation (ChIP) protocol in tomato
por: Ricardi, Martiniano M, et al.
Publicado: (2010)

Epigenomic profiling of archived FFPE tissues by enhanced PAT-ChIP (EPAT-ChIP) technology
por: Amatori, Stefano, et al.
Publicado: (2018)

A Method to Study the Epigenetic Chromatin States of Rare Hematopoietic Stem and Progenitor Cells; MiniChIP–Chip
por: Weishaupt, Holger, et al.
Publicado: (2010)

A native chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in strawberry fruits
por: Huang, Xiaorong, et al.
Publicado: (2020)

Enhanced and controlled chromatin extraction from FFPE tissues and the application to ChIP-seq
por: Zhong, Jian, et al.
Publicado: (2019)

ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking
por: Wu, George, et al.
Publicado: (2013)

Protocol: Chromatin immunoprecipitation (ChIP) methodology to investigate histone modifications in two model diatom species
por: Lin, Xin, et al.
Publicado: (2012)

lobChIP: from cells to sequencing ready ChIP libraries in a single day
por: Wallerman, Ola, et al.
Publicado: (2015)

ChIP on Chip: surprising results are often artifacts
por: Waldminghaus, Torsten, et al.
Publicado: (2010)

A ChIP on the shoulder? Chromatin immunoprecipitation and validation strategies for ChIP antibodies
por: Wardle, Fiona C., et al.
Publicado: (2015)

Purification of nanogram-range immunoprecipitated DNA in ChIP-seq application
por: Zhong, Jian, et al.
Publicado: (2017)

Parameter estimation for robust HMM analysis of ChIP-chip data
por: Humburg, Peter, et al.
Publicado: (2008)

Improved ChIP-chip analysis by a mixture model approach
por: Sun, Wei, et al.
Publicado: (2009)

Quantized correlation coefficient for measuring reproducibility of ChIP-chip data
por: Peng, Shouyong, et al.
Publicado: (2010)

Bayesian modeling of ChIP-chip data using latent variables
por: Wu, Mingqi, et al.
Publicado: (2009)

Nonparametric Tests for Differential Histone Enrichment with ChIP-Seq Data
por: Wu, Qian, et al.
Publicado: (2015)

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data
por: Wu, George, et al.
Publicado: (2013)

Shape-based peak identification for ChIP-Seq
por: Hower, Valerie, et al.
Publicado: (2011)

2C-ChIP: measuring chromatin immunoprecipitation signal from defined genomic regions with deep sequencing
por: Wang, Xue Qing David, et al.
Publicado: (2019)

PAT-ChIP coupled with laser microdissection allows the study of chromatin in selected cell populations from paraffin-embedded patient samples
por: Amatori, Stefano, et al.
Publicado: (2014)

The Current State of Chromatin Immunoprecipitation (ChIP) from FFPE Tissues
por: Amatori, Stefano, et al.
Publicado: (2022)

Limitations and possibilities of low cell number ChIP-seq
por: Gilfillan, Gregor D, et al.
Publicado: (2012)

Chromatin Immunoprecipitation (ChIP) in Mouse T-cell Lines
por: Giaimo, Benedetto Daniele, et al.
Publicado: (2017)

Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data
por: Carroll, Thomas S., et al.
Publicado: (2014)

Differential motif enrichment analysis of paired ChIP-seq experiments
por: Lesluyes, Tom, et al.
Publicado: (2014)

ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation
por: McCann, Jennifer A, et al.
Publicado: (2007)

Serial ChIP as a tool to investigate the co-localization or exclusion of proteins on plant genes
por: Xie, Zidian, et al.
Publicado: (2008)

Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq
por: Busby, Michele, et al.
Publicado: (2016)

MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data
por: Chen, Yiwen, et al.
Publicado: (2011)

Optimal use of tandem biotin and V5 tags in ChIP assays
por: Kolodziej, Katarzyna E, et al.
Publicado: (2009)

The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding
por: Kornacker, Karl, et al.
Publicado: (2012)

MMDiff: quantitative testing for shape changes in ChIP-Seq data sets
por: Schweikert, Gabriele, et al.
Publicado: (2013)

RACS: rapid analysis of ChIP-Seq data for contig based genomes
por: Saettone, Alejandro, et al.
Publicado: (2019)

Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: Identifying ChIP-quality p300 monoclonal antibodies
por: Gasper, William C., et al.
Publicado: (2014)

Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
por: Rotem, Assaf, et al.
Publicado: (2015)

Genome-wide Snapshot of Chromatin Regulators and States in Xenopus Embryos by ChIP-Seq
por: Gentsch, George E., et al.
Publicado: (2015)

A carrier-assisted ChIP-seq method for estrogen receptor-chromatin interactions from breast cancer core needle biopsy samples
por: Zwart, Wilbert, et al.
Publicado: (2013)

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
por: Zhu, Lihua J, et al.
Publicado: (2010)

W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data
por: Lan, Xun, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_ukci4d2fdr2s9jufnl4n4t37pv