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HeatMapViewer: interactive display of 2D data in biology
Summary: The HeatMapViewer is a BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray experiments or the outcome of mutational studies and the study of SNP-like seq...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000Research
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4023661/ https://www.ncbi.nlm.nih.gov/pubmed/24860644 http://dx.doi.org/10.12688/f1000research.3-48.v1 |
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author | Yachdav, Guy Hecht, Maximilian Pasmanik-Chor, Metsada Yeheskel, Adva Rost, Burkhard |
author_facet | Yachdav, Guy Hecht, Maximilian Pasmanik-Chor, Metsada Yeheskel, Adva Rost, Burkhard |
author_sort | Yachdav, Guy |
collection | PubMed |
description | Summary: The HeatMapViewer is a BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray experiments or the outcome of mutational studies and the study of SNP-like sequence variants. It can be easily integrated into documents and provides a powerful, interactive way to visualize heat maps in web applications. The software uses a scalable graphics technology that adapts the visualization component to any required resolution, a useful feature for a presentation with many different data-points. The component can be applied to present various biological data types. Here, we present two such cases – showing gene expression data and visualizing mutability landscape analysis. Availability: https://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7706. |
format | Online Article Text |
id | pubmed-4023661 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | F1000Research |
record_format | MEDLINE/PubMed |
spelling | pubmed-40236612014-05-22 HeatMapViewer: interactive display of 2D data in biology Yachdav, Guy Hecht, Maximilian Pasmanik-Chor, Metsada Yeheskel, Adva Rost, Burkhard F1000Res Web Tool Summary: The HeatMapViewer is a BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray experiments or the outcome of mutational studies and the study of SNP-like sequence variants. It can be easily integrated into documents and provides a powerful, interactive way to visualize heat maps in web applications. The software uses a scalable graphics technology that adapts the visualization component to any required resolution, a useful feature for a presentation with many different data-points. The component can be applied to present various biological data types. Here, we present two such cases – showing gene expression data and visualizing mutability landscape analysis. Availability: https://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7706. F1000Research 2014-02-13 /pmc/articles/PMC4023661/ /pubmed/24860644 http://dx.doi.org/10.12688/f1000research.3-48.v1 Text en Copyright: © 2014 Yachdav G et al. http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Web Tool Yachdav, Guy Hecht, Maximilian Pasmanik-Chor, Metsada Yeheskel, Adva Rost, Burkhard HeatMapViewer: interactive display of 2D data in biology |
title |
HeatMapViewer: interactive display of 2D data in biology |
title_full |
HeatMapViewer: interactive display of 2D data in biology |
title_fullStr |
HeatMapViewer: interactive display of 2D data in biology |
title_full_unstemmed |
HeatMapViewer: interactive display of 2D data in biology |
title_short |
HeatMapViewer: interactive display of 2D data in biology |
title_sort | heatmapviewer: interactive display of 2d data in biology |
topic | Web Tool |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4023661/ https://www.ncbi.nlm.nih.gov/pubmed/24860644 http://dx.doi.org/10.12688/f1000research.3-48.v1 |
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