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HeatMapViewer: interactive display of 2D data in biology

Summary: The HeatMapViewer is a BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray experiments or the outcome of mutational studies and the study of SNP-like seq...

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Detalles Bibliográficos
Autores principales: Yachdav, Guy, Hecht, Maximilian, Pasmanik-Chor, Metsada, Yeheskel, Adva, Rost, Burkhard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4023661/
https://www.ncbi.nlm.nih.gov/pubmed/24860644
http://dx.doi.org/10.12688/f1000research.3-48.v1
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author Yachdav, Guy
Hecht, Maximilian
Pasmanik-Chor, Metsada
Yeheskel, Adva
Rost, Burkhard
author_facet Yachdav, Guy
Hecht, Maximilian
Pasmanik-Chor, Metsada
Yeheskel, Adva
Rost, Burkhard
author_sort Yachdav, Guy
collection PubMed
description Summary: The HeatMapViewer is a BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray experiments or the outcome of mutational studies and the study of SNP-like sequence variants. It can be easily integrated into documents and provides a powerful, interactive way to visualize heat maps in web applications. The software uses a scalable graphics technology that adapts the visualization component to any required resolution, a useful feature for a presentation with many different data-points. The component can be applied to present various biological data types. Here, we present two such cases – showing gene expression data and visualizing mutability landscape analysis. Availability: https://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7706.
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spelling pubmed-40236612014-05-22 HeatMapViewer: interactive display of 2D data in biology Yachdav, Guy Hecht, Maximilian Pasmanik-Chor, Metsada Yeheskel, Adva Rost, Burkhard F1000Res Web Tool Summary: The HeatMapViewer is a BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray experiments or the outcome of mutational studies and the study of SNP-like sequence variants. It can be easily integrated into documents and provides a powerful, interactive way to visualize heat maps in web applications. The software uses a scalable graphics technology that adapts the visualization component to any required resolution, a useful feature for a presentation with many different data-points. The component can be applied to present various biological data types. Here, we present two such cases – showing gene expression data and visualizing mutability landscape analysis. Availability: https://github.com/biojs/biojs; http://dx.doi.org/10.5281/zenodo.7706. F1000Research 2014-02-13 /pmc/articles/PMC4023661/ /pubmed/24860644 http://dx.doi.org/10.12688/f1000research.3-48.v1 Text en Copyright: © 2014 Yachdav G et al. http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Web Tool
Yachdav, Guy
Hecht, Maximilian
Pasmanik-Chor, Metsada
Yeheskel, Adva
Rost, Burkhard
HeatMapViewer: interactive display of 2D data in biology
title HeatMapViewer: interactive display of 2D data in biology
title_full HeatMapViewer: interactive display of 2D data in biology
title_fullStr HeatMapViewer: interactive display of 2D data in biology
title_full_unstemmed HeatMapViewer: interactive display of 2D data in biology
title_short HeatMapViewer: interactive display of 2D data in biology
title_sort heatmapviewer: interactive display of 2d data in biology
topic Web Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4023661/
https://www.ncbi.nlm.nih.gov/pubmed/24860644
http://dx.doi.org/10.12688/f1000research.3-48.v1
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