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Worm variation made accessible: Take your shopping cart to store, link, and investigate!

In Caenorhabditis elegans, the recent advances in high-throughput quantitative analyses of natural genetic and phenotypic variation have led to a wealth of data on genotype phenotype relations. This data has resulted in the discovery of genes with major allelic effects and insights in the effect of...

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Autores principales: Snoek, L Basten, Joeri van der Velde, K, Li, Yang, Jansen, Ritsert C, Swertz, Morris A, Kammenga, Jan E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Landes Bioscience 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4024057/
https://www.ncbi.nlm.nih.gov/pubmed/24843834
http://dx.doi.org/10.4161/worm.28357
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author Snoek, L Basten
Joeri van der Velde, K
Li, Yang
Jansen, Ritsert C
Swertz, Morris A
Kammenga, Jan E
author_facet Snoek, L Basten
Joeri van der Velde, K
Li, Yang
Jansen, Ritsert C
Swertz, Morris A
Kammenga, Jan E
author_sort Snoek, L Basten
collection PubMed
description In Caenorhabditis elegans, the recent advances in high-throughput quantitative analyses of natural genetic and phenotypic variation have led to a wealth of data on genotype phenotype relations. This data has resulted in the discovery of genes with major allelic effects and insights in the effect of natural genetic variation on a whole range of complex traits as well as how this variation is distributed across the genome. Regardless of the advances presented in specific studies, the majority of the data generated in these studies had yet to be made easily accessible, allowing for meta-analysis. Not only data in figures or tables but meta-data should be accessible for further investigation and comparison between studies. A platform was created where all the data, phenotypic measurements, genotypes, and mappings can be stored, compared, and new linkages within and between published studies can be discovered. WormQTL focuses on quantitative genetics in Caenorhabditis and other nematode species, whereas WormQTL(HD) quantitatively links gene expression quantitative trait loci (eQTL) in C. elegans to gene–disease associations in humans.
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spelling pubmed-40240572015-03-06 Worm variation made accessible: Take your shopping cart to store, link, and investigate! Snoek, L Basten Joeri van der Velde, K Li, Yang Jansen, Ritsert C Swertz, Morris A Kammenga, Jan E Worm Commentary In Caenorhabditis elegans, the recent advances in high-throughput quantitative analyses of natural genetic and phenotypic variation have led to a wealth of data on genotype phenotype relations. This data has resulted in the discovery of genes with major allelic effects and insights in the effect of natural genetic variation on a whole range of complex traits as well as how this variation is distributed across the genome. Regardless of the advances presented in specific studies, the majority of the data generated in these studies had yet to be made easily accessible, allowing for meta-analysis. Not only data in figures or tables but meta-data should be accessible for further investigation and comparison between studies. A platform was created where all the data, phenotypic measurements, genotypes, and mappings can be stored, compared, and new linkages within and between published studies can be discovered. WormQTL focuses on quantitative genetics in Caenorhabditis and other nematode species, whereas WormQTL(HD) quantitatively links gene expression quantitative trait loci (eQTL) in C. elegans to gene–disease associations in humans. Landes Bioscience 2014-03-06 /pmc/articles/PMC4024057/ /pubmed/24843834 http://dx.doi.org/10.4161/worm.28357 Text en Copyright © 2014 Landes Bioscience http://creativecommons.org/licenses/by-nc/3.0/ This is an open-access article licensed under a Creative Commons Attribution-NonCommercial 3.0 Unported License. The article may be redistributed, reproduced, and reused for non-commercial purposes, provided the original source is properly cited.
spellingShingle Commentary
Snoek, L Basten
Joeri van der Velde, K
Li, Yang
Jansen, Ritsert C
Swertz, Morris A
Kammenga, Jan E
Worm variation made accessible: Take your shopping cart to store, link, and investigate!
title Worm variation made accessible: Take your shopping cart to store, link, and investigate!
title_full Worm variation made accessible: Take your shopping cart to store, link, and investigate!
title_fullStr Worm variation made accessible: Take your shopping cart to store, link, and investigate!
title_full_unstemmed Worm variation made accessible: Take your shopping cart to store, link, and investigate!
title_short Worm variation made accessible: Take your shopping cart to store, link, and investigate!
title_sort worm variation made accessible: take your shopping cart to store, link, and investigate!
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4024057/
https://www.ncbi.nlm.nih.gov/pubmed/24843834
http://dx.doi.org/10.4161/worm.28357
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