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A Metabolomic Approach to Animal Vitreous Humor Topographical Composition: A Pilot Study
The purpose of this study was to evaluate the feasibility of a (1)H-NMR-based metabolomic approach to explore the metabolomic signature of different topographical areas of vitreous humor (VH) in an animal model. Five ocular globes were enucleated from five goats and immediately frozen at −80°C. Once...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4028277/ https://www.ncbi.nlm.nih.gov/pubmed/24845217 http://dx.doi.org/10.1371/journal.pone.0097773 |
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author | Locci, Emanuela Scano, Paola Rosa, Maria Francesca Nioi, Matteo Noto, Antonio Atzori, Luigi Demontis, Roberto De-Giorgio, Fabio d'Aloja, Ernesto |
author_facet | Locci, Emanuela Scano, Paola Rosa, Maria Francesca Nioi, Matteo Noto, Antonio Atzori, Luigi Demontis, Roberto De-Giorgio, Fabio d'Aloja, Ernesto |
author_sort | Locci, Emanuela |
collection | PubMed |
description | The purpose of this study was to evaluate the feasibility of a (1)H-NMR-based metabolomic approach to explore the metabolomic signature of different topographical areas of vitreous humor (VH) in an animal model. Five ocular globes were enucleated from five goats and immediately frozen at −80°C. Once frozen, three of them were sectioned, and four samples corresponding to four different VH areas were collected: the cortical, core, and basal, which was further divided into a superior and an inferior fraction. An additional two samples were collected that were representative of the whole vitreous body. (1)H-NMR spectra were acquired for twenty-three goat vitreous samples with the aim of characterizing the metabolomic signature of this biofluid and identifying whether any site-specific patterns were present. Multivariate statistical analysis (MVA) of the spectral data were carried out, including Principal Component Analysis (PCA), Hierarchical Cluster Analysis (HCA), and Partial Least Squares Discriminant Analysis (PLS-DA). A unique metabolomic signature belonging to each area was observed. The cortical area was characterized by lactate, glutamine, choline, and its derivatives, N-acetyl groups, creatine, and glycerol; the core area was characterized by glucose, acetate, and scyllo-inositol; and the basal area was characterized by branched-chain amino acids (BCAA), betaine, alanine, ascorbate, lysine, and myo-inositol. We propose a speculative approach on the topographic role of these molecules that are mainly responsible for metabolic differences among the as-identified areas. (1)H-NMR-based metabolomic analysis has shown to be an important tool for investigating the VH. In particular, this approach was able to assess in the samples here analyzed the presence of different functional areas on the basis of a different metabolite distribution. |
format | Online Article Text |
id | pubmed-4028277 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-40282772014-05-21 A Metabolomic Approach to Animal Vitreous Humor Topographical Composition: A Pilot Study Locci, Emanuela Scano, Paola Rosa, Maria Francesca Nioi, Matteo Noto, Antonio Atzori, Luigi Demontis, Roberto De-Giorgio, Fabio d'Aloja, Ernesto PLoS One Research Article The purpose of this study was to evaluate the feasibility of a (1)H-NMR-based metabolomic approach to explore the metabolomic signature of different topographical areas of vitreous humor (VH) in an animal model. Five ocular globes were enucleated from five goats and immediately frozen at −80°C. Once frozen, three of them were sectioned, and four samples corresponding to four different VH areas were collected: the cortical, core, and basal, which was further divided into a superior and an inferior fraction. An additional two samples were collected that were representative of the whole vitreous body. (1)H-NMR spectra were acquired for twenty-three goat vitreous samples with the aim of characterizing the metabolomic signature of this biofluid and identifying whether any site-specific patterns were present. Multivariate statistical analysis (MVA) of the spectral data were carried out, including Principal Component Analysis (PCA), Hierarchical Cluster Analysis (HCA), and Partial Least Squares Discriminant Analysis (PLS-DA). A unique metabolomic signature belonging to each area was observed. The cortical area was characterized by lactate, glutamine, choline, and its derivatives, N-acetyl groups, creatine, and glycerol; the core area was characterized by glucose, acetate, and scyllo-inositol; and the basal area was characterized by branched-chain amino acids (BCAA), betaine, alanine, ascorbate, lysine, and myo-inositol. We propose a speculative approach on the topographic role of these molecules that are mainly responsible for metabolic differences among the as-identified areas. (1)H-NMR-based metabolomic analysis has shown to be an important tool for investigating the VH. In particular, this approach was able to assess in the samples here analyzed the presence of different functional areas on the basis of a different metabolite distribution. Public Library of Science 2014-05-20 /pmc/articles/PMC4028277/ /pubmed/24845217 http://dx.doi.org/10.1371/journal.pone.0097773 Text en © 2014 Locci et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Locci, Emanuela Scano, Paola Rosa, Maria Francesca Nioi, Matteo Noto, Antonio Atzori, Luigi Demontis, Roberto De-Giorgio, Fabio d'Aloja, Ernesto A Metabolomic Approach to Animal Vitreous Humor Topographical Composition: A Pilot Study |
title | A Metabolomic Approach to Animal Vitreous Humor Topographical Composition: A Pilot Study |
title_full | A Metabolomic Approach to Animal Vitreous Humor Topographical Composition: A Pilot Study |
title_fullStr | A Metabolomic Approach to Animal Vitreous Humor Topographical Composition: A Pilot Study |
title_full_unstemmed | A Metabolomic Approach to Animal Vitreous Humor Topographical Composition: A Pilot Study |
title_short | A Metabolomic Approach to Animal Vitreous Humor Topographical Composition: A Pilot Study |
title_sort | metabolomic approach to animal vitreous humor topographical composition: a pilot study |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4028277/ https://www.ncbi.nlm.nih.gov/pubmed/24845217 http://dx.doi.org/10.1371/journal.pone.0097773 |
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