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To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies

A growing number of studies are reporting simultaneous infections by parasites in many different hosts. The detection of whether these parasites are significantly associated is important in medicine and epidemiology. Numerous approaches to detect associations are available, but only a few provide st...

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Autores principales: Vaumourin, Elise, Vourc'h, Gwenaël, Telfer, Sandra, Lambin, Xavier, Salih, Diaeldin, Seitzer, Ulrike, Morand, Serge, Charbonnel, Nathalie, Vayssier-Taussat, Muriel, Gasqui, Patrick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4030204/
https://www.ncbi.nlm.nih.gov/pubmed/24860791
http://dx.doi.org/10.3389/fcimb.2014.00062
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author Vaumourin, Elise
Vourc'h, Gwenaël
Telfer, Sandra
Lambin, Xavier
Salih, Diaeldin
Seitzer, Ulrike
Morand, Serge
Charbonnel, Nathalie
Vayssier-Taussat, Muriel
Gasqui, Patrick
author_facet Vaumourin, Elise
Vourc'h, Gwenaël
Telfer, Sandra
Lambin, Xavier
Salih, Diaeldin
Seitzer, Ulrike
Morand, Serge
Charbonnel, Nathalie
Vayssier-Taussat, Muriel
Gasqui, Patrick
author_sort Vaumourin, Elise
collection PubMed
description A growing number of studies are reporting simultaneous infections by parasites in many different hosts. The detection of whether these parasites are significantly associated is important in medicine and epidemiology. Numerous approaches to detect associations are available, but only a few provide statistical tests. Furthermore, they generally test for an overall detection of association and do not identify which parasite is associated with which other one. Here, we developed a new approach, the association screening approach, to detect the overall and the detail of multi-parasite associations. We studied the power of this new approach and of three other known ones (i.e., the generalized chi-square, the network and the multinomial GLM approaches) to identify parasite associations either due to parasite interactions or to confounding factors. We applied these four approaches to detect associations within two populations of multi-infected hosts: (1) rodents infected with Bartonella sp., Babesia microti and Anaplasma phagocytophilum and (2) bovine population infected with Theileria sp. and Babesia sp. We found that the best power is obtained with the screening model and the generalized chi-square test. The differentiation between associations, which are due to confounding factors and parasite interactions was not possible. The screening approach significantly identified associations between Bartonella doshiae and B. microti, and between T. parva, T. mutans, and T. velifera. Thus, the screening approach was relevant to test the overall presence of parasite associations and identify the parasite combinations that are significantly over- or under-represented. Unraveling whether the associations are due to real biological interactions or confounding factors should be further investigated. Nevertheless, in the age of genomics and the advent of new technologies, it is a considerable asset to speed up researches focusing on the mechanisms driving interactions between parasites.
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spelling pubmed-40302042014-05-23 To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies Vaumourin, Elise Vourc'h, Gwenaël Telfer, Sandra Lambin, Xavier Salih, Diaeldin Seitzer, Ulrike Morand, Serge Charbonnel, Nathalie Vayssier-Taussat, Muriel Gasqui, Patrick Front Cell Infect Microbiol Microbiology A growing number of studies are reporting simultaneous infections by parasites in many different hosts. The detection of whether these parasites are significantly associated is important in medicine and epidemiology. Numerous approaches to detect associations are available, but only a few provide statistical tests. Furthermore, they generally test for an overall detection of association and do not identify which parasite is associated with which other one. Here, we developed a new approach, the association screening approach, to detect the overall and the detail of multi-parasite associations. We studied the power of this new approach and of three other known ones (i.e., the generalized chi-square, the network and the multinomial GLM approaches) to identify parasite associations either due to parasite interactions or to confounding factors. We applied these four approaches to detect associations within two populations of multi-infected hosts: (1) rodents infected with Bartonella sp., Babesia microti and Anaplasma phagocytophilum and (2) bovine population infected with Theileria sp. and Babesia sp. We found that the best power is obtained with the screening model and the generalized chi-square test. The differentiation between associations, which are due to confounding factors and parasite interactions was not possible. The screening approach significantly identified associations between Bartonella doshiae and B. microti, and between T. parva, T. mutans, and T. velifera. Thus, the screening approach was relevant to test the overall presence of parasite associations and identify the parasite combinations that are significantly over- or under-represented. Unraveling whether the associations are due to real biological interactions or confounding factors should be further investigated. Nevertheless, in the age of genomics and the advent of new technologies, it is a considerable asset to speed up researches focusing on the mechanisms driving interactions between parasites. Frontiers Media S.A. 2014-05-15 /pmc/articles/PMC4030204/ /pubmed/24860791 http://dx.doi.org/10.3389/fcimb.2014.00062 Text en Copyright © 2014 Vaumourin, Vourc'h, Telfer, Lambin, Salih, Seitzer, Morand, Charbonnel, Vayssier-Taussat and Gasqui. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Vaumourin, Elise
Vourc'h, Gwenaël
Telfer, Sandra
Lambin, Xavier
Salih, Diaeldin
Seitzer, Ulrike
Morand, Serge
Charbonnel, Nathalie
Vayssier-Taussat, Muriel
Gasqui, Patrick
To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
title To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
title_full To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
title_fullStr To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
title_full_unstemmed To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
title_short To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
title_sort to be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4030204/
https://www.ncbi.nlm.nih.gov/pubmed/24860791
http://dx.doi.org/10.3389/fcimb.2014.00062
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