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To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies
A growing number of studies are reporting simultaneous infections by parasites in many different hosts. The detection of whether these parasites are significantly associated is important in medicine and epidemiology. Numerous approaches to detect associations are available, but only a few provide st...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4030204/ https://www.ncbi.nlm.nih.gov/pubmed/24860791 http://dx.doi.org/10.3389/fcimb.2014.00062 |
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author | Vaumourin, Elise Vourc'h, Gwenaël Telfer, Sandra Lambin, Xavier Salih, Diaeldin Seitzer, Ulrike Morand, Serge Charbonnel, Nathalie Vayssier-Taussat, Muriel Gasqui, Patrick |
author_facet | Vaumourin, Elise Vourc'h, Gwenaël Telfer, Sandra Lambin, Xavier Salih, Diaeldin Seitzer, Ulrike Morand, Serge Charbonnel, Nathalie Vayssier-Taussat, Muriel Gasqui, Patrick |
author_sort | Vaumourin, Elise |
collection | PubMed |
description | A growing number of studies are reporting simultaneous infections by parasites in many different hosts. The detection of whether these parasites are significantly associated is important in medicine and epidemiology. Numerous approaches to detect associations are available, but only a few provide statistical tests. Furthermore, they generally test for an overall detection of association and do not identify which parasite is associated with which other one. Here, we developed a new approach, the association screening approach, to detect the overall and the detail of multi-parasite associations. We studied the power of this new approach and of three other known ones (i.e., the generalized chi-square, the network and the multinomial GLM approaches) to identify parasite associations either due to parasite interactions or to confounding factors. We applied these four approaches to detect associations within two populations of multi-infected hosts: (1) rodents infected with Bartonella sp., Babesia microti and Anaplasma phagocytophilum and (2) bovine population infected with Theileria sp. and Babesia sp. We found that the best power is obtained with the screening model and the generalized chi-square test. The differentiation between associations, which are due to confounding factors and parasite interactions was not possible. The screening approach significantly identified associations between Bartonella doshiae and B. microti, and between T. parva, T. mutans, and T. velifera. Thus, the screening approach was relevant to test the overall presence of parasite associations and identify the parasite combinations that are significantly over- or under-represented. Unraveling whether the associations are due to real biological interactions or confounding factors should be further investigated. Nevertheless, in the age of genomics and the advent of new technologies, it is a considerable asset to speed up researches focusing on the mechanisms driving interactions between parasites. |
format | Online Article Text |
id | pubmed-4030204 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-40302042014-05-23 To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies Vaumourin, Elise Vourc'h, Gwenaël Telfer, Sandra Lambin, Xavier Salih, Diaeldin Seitzer, Ulrike Morand, Serge Charbonnel, Nathalie Vayssier-Taussat, Muriel Gasqui, Patrick Front Cell Infect Microbiol Microbiology A growing number of studies are reporting simultaneous infections by parasites in many different hosts. The detection of whether these parasites are significantly associated is important in medicine and epidemiology. Numerous approaches to detect associations are available, but only a few provide statistical tests. Furthermore, they generally test for an overall detection of association and do not identify which parasite is associated with which other one. Here, we developed a new approach, the association screening approach, to detect the overall and the detail of multi-parasite associations. We studied the power of this new approach and of three other known ones (i.e., the generalized chi-square, the network and the multinomial GLM approaches) to identify parasite associations either due to parasite interactions or to confounding factors. We applied these four approaches to detect associations within two populations of multi-infected hosts: (1) rodents infected with Bartonella sp., Babesia microti and Anaplasma phagocytophilum and (2) bovine population infected with Theileria sp. and Babesia sp. We found that the best power is obtained with the screening model and the generalized chi-square test. The differentiation between associations, which are due to confounding factors and parasite interactions was not possible. The screening approach significantly identified associations between Bartonella doshiae and B. microti, and between T. parva, T. mutans, and T. velifera. Thus, the screening approach was relevant to test the overall presence of parasite associations and identify the parasite combinations that are significantly over- or under-represented. Unraveling whether the associations are due to real biological interactions or confounding factors should be further investigated. Nevertheless, in the age of genomics and the advent of new technologies, it is a considerable asset to speed up researches focusing on the mechanisms driving interactions between parasites. Frontiers Media S.A. 2014-05-15 /pmc/articles/PMC4030204/ /pubmed/24860791 http://dx.doi.org/10.3389/fcimb.2014.00062 Text en Copyright © 2014 Vaumourin, Vourc'h, Telfer, Lambin, Salih, Seitzer, Morand, Charbonnel, Vayssier-Taussat and Gasqui. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Vaumourin, Elise Vourc'h, Gwenaël Telfer, Sandra Lambin, Xavier Salih, Diaeldin Seitzer, Ulrike Morand, Serge Charbonnel, Nathalie Vayssier-Taussat, Muriel Gasqui, Patrick To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies |
title | To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies |
title_full | To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies |
title_fullStr | To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies |
title_full_unstemmed | To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies |
title_short | To be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies |
title_sort | to be or not to be associated: power study of four statistical modeling approaches to identify parasite associations in cross-sectional studies |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4030204/ https://www.ncbi.nlm.nih.gov/pubmed/24860791 http://dx.doi.org/10.3389/fcimb.2014.00062 |
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