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A simple tool for neuroimaging data sharing
Data sharing is becoming increasingly common, but despite encouragement and facilitation by funding agencies, journals, and some research efforts, most neuroimaging data acquired today is still not shared due to political, financial, social, and technical barriers to sharing data that remain. In par...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4033259/ https://www.ncbi.nlm.nih.gov/pubmed/24904398 http://dx.doi.org/10.3389/fninf.2014.00052 |
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author | Haselgrove, Christian Poline, Jean-Baptiste Kennedy, David N. |
author_facet | Haselgrove, Christian Poline, Jean-Baptiste Kennedy, David N. |
author_sort | Haselgrove, Christian |
collection | PubMed |
description | Data sharing is becoming increasingly common, but despite encouragement and facilitation by funding agencies, journals, and some research efforts, most neuroimaging data acquired today is still not shared due to political, financial, social, and technical barriers to sharing data that remain. In particular, technical solutions are few for researchers that are not a part of larger efforts with dedicated sharing infrastructures, and social barriers such as the time commitment required to share can keep data from becoming publicly available. We present a system for sharing neuroimaging data, designed to be simple to use and to provide benefit to the data provider. The system consists of a server at the International Neuroinformatics Coordinating Facility (INCF) and user tools for uploading data to the server. The primary design principle for the user tools is ease of use: the user identifies a directory containing Digital Imaging and Communications in Medicine (DICOM) data, provides their INCF Portal authentication, and provides identifiers for the subject and imaging session. The user tool anonymizes the data and sends it to the server. The server then runs quality control routines on the data, and the data and the quality control reports are made public. The user retains control of the data and may change the sharing policy as they need. The result is that in a few minutes of the user’s time, DICOM data can be anonymized and made publicly available, and an initial quality control assessment can be performed on the data. The system is currently functional, and user tools and access to the public image database are available at http://xnat.incf.org/. |
format | Online Article Text |
id | pubmed-4033259 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-40332592014-06-05 A simple tool for neuroimaging data sharing Haselgrove, Christian Poline, Jean-Baptiste Kennedy, David N. Front Neuroinform Neuroscience Data sharing is becoming increasingly common, but despite encouragement and facilitation by funding agencies, journals, and some research efforts, most neuroimaging data acquired today is still not shared due to political, financial, social, and technical barriers to sharing data that remain. In particular, technical solutions are few for researchers that are not a part of larger efforts with dedicated sharing infrastructures, and social barriers such as the time commitment required to share can keep data from becoming publicly available. We present a system for sharing neuroimaging data, designed to be simple to use and to provide benefit to the data provider. The system consists of a server at the International Neuroinformatics Coordinating Facility (INCF) and user tools for uploading data to the server. The primary design principle for the user tools is ease of use: the user identifies a directory containing Digital Imaging and Communications in Medicine (DICOM) data, provides their INCF Portal authentication, and provides identifiers for the subject and imaging session. The user tool anonymizes the data and sends it to the server. The server then runs quality control routines on the data, and the data and the quality control reports are made public. The user retains control of the data and may change the sharing policy as they need. The result is that in a few minutes of the user’s time, DICOM data can be anonymized and made publicly available, and an initial quality control assessment can be performed on the data. The system is currently functional, and user tools and access to the public image database are available at http://xnat.incf.org/. Frontiers Media S.A. 2014-05-21 /pmc/articles/PMC4033259/ /pubmed/24904398 http://dx.doi.org/10.3389/fninf.2014.00052 Text en Copyright © 2014 Haselgrove, Poline and Kennedy. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Haselgrove, Christian Poline, Jean-Baptiste Kennedy, David N. A simple tool for neuroimaging data sharing |
title | A simple tool for neuroimaging data sharing |
title_full | A simple tool for neuroimaging data sharing |
title_fullStr | A simple tool for neuroimaging data sharing |
title_full_unstemmed | A simple tool for neuroimaging data sharing |
title_short | A simple tool for neuroimaging data sharing |
title_sort | simple tool for neuroimaging data sharing |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4033259/ https://www.ncbi.nlm.nih.gov/pubmed/24904398 http://dx.doi.org/10.3389/fninf.2014.00052 |
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