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Network of microRNAs-mRNAs Interactions in Pancreatic Cancer
Background. MicroRNAs are small RNA molecules that regulate the expression of certain genes through interaction with mRNA targets and are mainly involved in human cancer. This study was conducted to make the network of miRNAs-mRNAs interactions in pancreatic cancer as the fourth leading cause of can...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4033392/ https://www.ncbi.nlm.nih.gov/pubmed/24895587 http://dx.doi.org/10.1155/2014/534821 |
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author | Naderi, Elnaz Mostafaei, Mehdi Pourshams, Akram Mohamadkhani, Ashraf |
author_facet | Naderi, Elnaz Mostafaei, Mehdi Pourshams, Akram Mohamadkhani, Ashraf |
author_sort | Naderi, Elnaz |
collection | PubMed |
description | Background. MicroRNAs are small RNA molecules that regulate the expression of certain genes through interaction with mRNA targets and are mainly involved in human cancer. This study was conducted to make the network of miRNAs-mRNAs interactions in pancreatic cancer as the fourth leading cause of cancer death. Methods. 56 miRNAs that were exclusively expressed and 1176 genes that were downregulated or silenced in pancreas cancer were extracted from beforehand investigations. MiRNA–mRNA interactions data analysis and related networks were explored using MAGIA tool and Cytoscape 3 software. Functional annotations of candidate genes in pancreatic cancer were identified by DAVID annotation tool. Results. This network is made of 217 nodes for mRNA, 15 nodes for miRNA, and 241 edges that show 241 regulations between 15 miRNAs and 217 target genes. The miR-24 was the most significantly powerful miRNA that regulated series of important genes. ACVR2B, GFRA1, and MTHFR were significant target genes were that downregulated. Conclusion. Although the collected previous data seems to be a treasure trove, there was no study simultaneous to analysis of miRNAs and mRNAs interaction. Network of miRNA-mRNA interactions will help to corroborate experimental remarks and could be used to refine miRNA target predictions for developing new therapeutic approaches. |
format | Online Article Text |
id | pubmed-4033392 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-40333922014-06-03 Network of microRNAs-mRNAs Interactions in Pancreatic Cancer Naderi, Elnaz Mostafaei, Mehdi Pourshams, Akram Mohamadkhani, Ashraf Biomed Res Int Research Article Background. MicroRNAs are small RNA molecules that regulate the expression of certain genes through interaction with mRNA targets and are mainly involved in human cancer. This study was conducted to make the network of miRNAs-mRNAs interactions in pancreatic cancer as the fourth leading cause of cancer death. Methods. 56 miRNAs that were exclusively expressed and 1176 genes that were downregulated or silenced in pancreas cancer were extracted from beforehand investigations. MiRNA–mRNA interactions data analysis and related networks were explored using MAGIA tool and Cytoscape 3 software. Functional annotations of candidate genes in pancreatic cancer were identified by DAVID annotation tool. Results. This network is made of 217 nodes for mRNA, 15 nodes for miRNA, and 241 edges that show 241 regulations between 15 miRNAs and 217 target genes. The miR-24 was the most significantly powerful miRNA that regulated series of important genes. ACVR2B, GFRA1, and MTHFR were significant target genes were that downregulated. Conclusion. Although the collected previous data seems to be a treasure trove, there was no study simultaneous to analysis of miRNAs and mRNAs interaction. Network of miRNA-mRNA interactions will help to corroborate experimental remarks and could be used to refine miRNA target predictions for developing new therapeutic approaches. Hindawi Publishing Corporation 2014 2014-05-07 /pmc/articles/PMC4033392/ /pubmed/24895587 http://dx.doi.org/10.1155/2014/534821 Text en Copyright © 2014 Elnaz Naderi et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Naderi, Elnaz Mostafaei, Mehdi Pourshams, Akram Mohamadkhani, Ashraf Network of microRNAs-mRNAs Interactions in Pancreatic Cancer |
title | Network of microRNAs-mRNAs Interactions in Pancreatic Cancer |
title_full | Network of microRNAs-mRNAs Interactions in Pancreatic Cancer |
title_fullStr | Network of microRNAs-mRNAs Interactions in Pancreatic Cancer |
title_full_unstemmed | Network of microRNAs-mRNAs Interactions in Pancreatic Cancer |
title_short | Network of microRNAs-mRNAs Interactions in Pancreatic Cancer |
title_sort | network of micrornas-mrnas interactions in pancreatic cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4033392/ https://www.ncbi.nlm.nih.gov/pubmed/24895587 http://dx.doi.org/10.1155/2014/534821 |
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