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Insulin Resistance: Regression and Clustering

In this paper we try to define insulin resistance (IR) precisely for a group of Chinese women. Our definition deliberately does not depend upon body mass index (BMI) or age, although in other studies, with particular random effects models quite different from models used here, BMI accounts for a lar...

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Autores principales: Yoon, Sangho, Assimes, Themistocles L., Quertermous, Thomas, Hsiao, Chin-Fu, Chuang, Lee-Ming, Hwu, Chii-Min, Rajaratnam, Bala, Olshen, Richard A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4041565/
https://www.ncbi.nlm.nih.gov/pubmed/24887437
http://dx.doi.org/10.1371/journal.pone.0094129
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author Yoon, Sangho
Assimes, Themistocles L.
Quertermous, Thomas
Hsiao, Chin-Fu
Chuang, Lee-Ming
Hwu, Chii-Min
Rajaratnam, Bala
Olshen, Richard A.
author_facet Yoon, Sangho
Assimes, Themistocles L.
Quertermous, Thomas
Hsiao, Chin-Fu
Chuang, Lee-Ming
Hwu, Chii-Min
Rajaratnam, Bala
Olshen, Richard A.
author_sort Yoon, Sangho
collection PubMed
description In this paper we try to define insulin resistance (IR) precisely for a group of Chinese women. Our definition deliberately does not depend upon body mass index (BMI) or age, although in other studies, with particular random effects models quite different from models used here, BMI accounts for a large part of the variability in IR. We accomplish our goal through application of Gauss mixture vector quantization (GMVQ), a technique for clustering that was developed for application to lossy data compression. Defining data come from measurements that play major roles in medical practice. A precise statement of what the data are is in Section 1. Their family structures are described in detail. They concern levels of lipids and the results of an oral glucose tolerance test (OGTT). We apply GMVQ to residuals obtained from regressions of outcomes of an OGTT and lipids on functions of age and BMI that are inferred from the data. A bootstrap procedure developed for our family data supplemented by insights from other approaches leads us to believe that two clusters are appropriate for defining IR precisely. One cluster consists of women who are IR, and the other of women who seem not to be. Genes and other features are used to predict cluster membership. We argue that prediction with “main effects” is not satisfactory, but prediction that includes interactions may be.
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spelling pubmed-40415652014-06-09 Insulin Resistance: Regression and Clustering Yoon, Sangho Assimes, Themistocles L. Quertermous, Thomas Hsiao, Chin-Fu Chuang, Lee-Ming Hwu, Chii-Min Rajaratnam, Bala Olshen, Richard A. PLoS One Research Article In this paper we try to define insulin resistance (IR) precisely for a group of Chinese women. Our definition deliberately does not depend upon body mass index (BMI) or age, although in other studies, with particular random effects models quite different from models used here, BMI accounts for a large part of the variability in IR. We accomplish our goal through application of Gauss mixture vector quantization (GMVQ), a technique for clustering that was developed for application to lossy data compression. Defining data come from measurements that play major roles in medical practice. A precise statement of what the data are is in Section 1. Their family structures are described in detail. They concern levels of lipids and the results of an oral glucose tolerance test (OGTT). We apply GMVQ to residuals obtained from regressions of outcomes of an OGTT and lipids on functions of age and BMI that are inferred from the data. A bootstrap procedure developed for our family data supplemented by insights from other approaches leads us to believe that two clusters are appropriate for defining IR precisely. One cluster consists of women who are IR, and the other of women who seem not to be. Genes and other features are used to predict cluster membership. We argue that prediction with “main effects” is not satisfactory, but prediction that includes interactions may be. Public Library of Science 2014-06-02 /pmc/articles/PMC4041565/ /pubmed/24887437 http://dx.doi.org/10.1371/journal.pone.0094129 Text en © 2014 Yoon et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Yoon, Sangho
Assimes, Themistocles L.
Quertermous, Thomas
Hsiao, Chin-Fu
Chuang, Lee-Ming
Hwu, Chii-Min
Rajaratnam, Bala
Olshen, Richard A.
Insulin Resistance: Regression and Clustering
title Insulin Resistance: Regression and Clustering
title_full Insulin Resistance: Regression and Clustering
title_fullStr Insulin Resistance: Regression and Clustering
title_full_unstemmed Insulin Resistance: Regression and Clustering
title_short Insulin Resistance: Regression and Clustering
title_sort insulin resistance: regression and clustering
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4041565/
https://www.ncbi.nlm.nih.gov/pubmed/24887437
http://dx.doi.org/10.1371/journal.pone.0094129
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